check df for tipdated models


read.phyDat type="USER" , levels=...


rell bootstrap (Ultrafast Bootstrap) testing


vignettes discrete


ancestral
as.phyDat für non-DNA mit [] und contrast für parsimony, export als nexus file
"array" output
add nodelabels an results




test1 <- ancestral.pars(tree, Laurasiatherian, "ACCTRAN", return = "phyDat")
test3 <- ancestral.pars(tree, Laurasiatherian, "POSTORDER", return = "phyDat")

# fixed
test2 <- ancestral.pars(tree, Laurasiatherian, "MPR", return = "phyDat")


hash trees in C++ set_difference and sort on vectors, done

unique.multiPhylo, ratchet + stochastic adding


fix optRooted towards the root!!!
phylo.R#1547


createLabels
addConfidencesMultiPhylo
addConfidences.networx
addConfidences.multiPhylo
presenceAbsence
coords



