b41a039f98dbaf6f5e556ab27e2cf213 *DESCRIPTION
aed0d0e285d2122b353361ad46d84299 *NAMESPACE
c37d8e718eaaa35ddaa904f27cf2ef03 *NEWS
115bc297835dcaab7d32527fcacb2061 *R/Coalescent.R
874ee7c405b1384b2f04828ac27574ef *R/Densi.R
654b5615e239deafcf8499a7303ba6c2 *R/RcppExports.R
f916be823b9a838d49145695b0a37aa1 *R/SOWH.R
188e8e2a81eb0c50cc6b7cda6d2c9b98 *R/cladePar.R
db718843face57068ea5d842cccc22e2 *R/clanistic.R
e4992df0ce2eaeb1380543eed22aa769 *R/dist.p.R
afc666deca48b167d9c5ca4e9903a30e *R/distSeq.R
5a7708803221f561767f2c94d25db76e *R/fitch.R
0feeebf15c688ec1dd1a003e4c9e488c *R/neighborNet.R
43346cdbdfd0a819f69a6fbcf8f10ff5 *R/networx.R
325b732ba591e94290cb41216d15b756 *R/parsimony.R
e27c86724f1d819a11bbb4674e4e626f *R/phyDat.R
90e4fe75b2090a4754d0b500967f4317 *R/phylo.R
ef07cb79ed0ece0caa494ed7c566e17b *R/sankoff.R
bd5ce765336904ef9fd6ee286dc42220 *R/simSeq.R
2b4d6884b4ee2b92e617cea76f79d3da *R/sysdata.rda
b10db1358eff8e0d1ed28aff3f318ce5 *R/treeManipulation.R
603da6e70fbda402dc8893f0e1eb61a9 *R/treedist.R
3039910e634a7e769f9d7d51330e6c63 *R/zzz.R
fd3b3539a74c05bdcc9f368f3ee222ad *README.md
083175fe1b1bf12a677a6404e6cbd60a *build/vignette.rds
4a92b07bcd170e85bd237e460acafa93 *data/Laurasiatherian.RData
4b269c2e640293341b9b1c04d4dd7f4e *data/chloroplast.RData
19f84425e8caaf9f605490cdff17dd81 *data/yeast.RData
b4d3fa3f40aae3a68846d1f28274e9a0 *inst/CITATION
61b3722df2ead748e0db8595428412a1 *inst/README
cd23e5801a1f3632bf0cdd76e5242279 *inst/doc/Ancestral.R
0b18e27e3877621f05e6f78c89a0f5d2 *inst/doc/Ancestral.Rnw
bfd8e0dfe0c57e211e4600e8221b530d *inst/doc/Ancestral.pdf
5ae7b5f00020d5544ffe34f27420749b *inst/doc/Networx.R
efd64c8a6ee13e6443a20adf473d17e4 *inst/doc/Networx.Rmd
555b48fe21566da8383c1ee92e7a9b81 *inst/doc/Networx.html
e7c9012ad6d10f1c247564b2562b3eda *inst/doc/Trees.R
a6ff44c68626895b856effc7e646446d *inst/doc/Trees.Rnw
46d2167ad02c1ee4670cd07e6420876c *inst/doc/Trees.pdf
1d5112656a0fe77fd68081a8a81474b9 *inst/doc/phangorn-specials.R
6e60535c60981d4f5492b73ebf7344df *inst/doc/phangorn-specials.Rnw
1c3fda481fca1865b5a0b6dae6667885 *inst/doc/phangorn-specials.pdf
3009f9da02a198cb557d435cc5ad8c7f *inst/extdata/Blosum62.dat
72f496d4c6e937ffe744d25bd8891313 *inst/extdata/Dayhoff.dat
5aa357dab0e72b27023e4302bc37dbad *inst/extdata/FLU.dat
7f63f617d5d29421b0bd90ab8511feb7 *inst/extdata/HIVb.dat
29e1aa10906a86bb9bca6d9c7f98a6cb *inst/extdata/HIVw.dat
ca86e539345fa57de5c77a60308bed09 *inst/extdata/JTT.dat
fdc1176d0c0f2db3de1c9dfd83d3c070 *inst/extdata/MtZoa.dat
106715eba35efc2743ccad7923ac13ce *inst/extdata/RtREV.dat
e05f5a0ca507e4e15e7b95d1ce93b9fa *inst/extdata/VT.dat
fc090d051ce4f18b937448a254e2764e *inst/extdata/cpREV.dat
50c707c26bf9015b37670f15d5e1c14b *inst/extdata/dayhoff-dcmut.dat
6da24109959f0c7a7db50c8db78d5d42 *inst/extdata/jtt-dcmut.dat
ddc4bd45521cd72848aaf2f79b90ac6e *inst/extdata/lg.dat
917303a3df098f9137c651de0afa78fa *inst/extdata/mtArt.dat
1cd5e39670b86d32b5fe5c27dcc79648 *inst/extdata/mtREV24.dat
0ca0d0e987fcebf847a876779eddd934 *inst/extdata/mtmam.dat
87fa1533c4dfe7074237cfa2196bcbeb *inst/extdata/wag.dat
985da8b17504af26eff230a7160f208e *man/Ancestors.Rd
bda5669b71de975e1309d909c495b71f *man/Laurasiatherian.Rd
4d6fb151c28a597eadc0d4ec2c59a504 *man/NJ.Rd
5dd84777963b553e8c89bddc951b17c8 *man/SH.test.Rd
b3418f878911164dd974046f0492c79c *man/SOWH.test.Rd
6403c950d8f9700d3fe1c847970461ef *man/allTrees.Rd
2c88d4ded0156a68c44cee9e8fc290b4 *man/ancestral.pml.Rd
52ca504c035177a8ac1dbe43fc8e90d5 *man/as.splits.Rd
3b53888e5f37fd54344286a9175d8dc2 *man/bab.Rd
22ea01fa824c0992bd55a8a43de76b21 *man/bootstrap.pml.Rd
22ad0ef60c2edd8b3d003f170f2fa15a *man/chloroplast.Rd
4361615c7d1dc7beb8a4e6118505423c *man/cladePar.Rd
8d3c6fd646d8a64e29dc79791692a388 *man/consensusNet.Rd
e99c28d255d25b20b6c02b772e88bacc *man/densiTree.Rd
f44e43abbbf7707821627c8e88f6e9fa *man/designTree.Rd
924c4e906042d64ac4fc4907af8c6cf1 *man/dfactorial.Rd
559e1e95a100d3393e508513ecce311d *man/dist.hamming.Rd
e7e01cc12be2fac182ff773826ad286f *man/dist.p.Rd
dbc23facc26a85fbc08711c754894cbb *man/distanceHadamard.Rd
72abceeb247f22b3da6560df0c20468a *man/getClans.Rd
c1cacff95f20b574c03126d3f8e24106 *man/hadamard.Rd
9c306689d9d7cd539d8d1055b35e24a2 *man/lento.Rd
f24a38210a0e90d3241e27514a6f5b8a *man/midpoint.Rd
970c755f7ac1a0d81ca7d38bf2119a9f *man/modelTest.Rd
5a825bb21eeef78dccf760a5ee0aca26 *man/neighborNet.Rd
94cd3c21e4dd4a6919db7fde5146a711 *man/nni.Rd
f5175ae5af6f9dea5bd0ee51e302e6a0 *man/parsimony.Rd
06d3770fff0d07f19393875735cfa004 *man/phangorn-package.Rd
20ab2e9ecabe1d3cae7c499b02e92824 *man/phyDat.Rd
1b46f1588ec4e8706df8de61eaa63058 *man/plot.networx.Rd
cb484368c04bf20d286dedf974c83da1 *man/pml.Rd
deadaacd3d541c707db8aab53ca1e35d *man/pml.fit.Rd
9339adbeebc944cc20d89caf8d46c544 *man/pmlCluster.Rd
8b06bdee57c510a690ea04b40bac4844 *man/pmlMix.Rd
10f65e72b2d36d44fa33c8a31ddd6418 *man/pmlPart.Rd
bfc83a71d7de4e1c0b994b8b9c853439 *man/read.aa.Rd
eaadcb69db59ca4c512eeb6258013714 *man/simSeq.Rd
9bfb43eb7ed5a2a3a36496bfffa965dd *man/splitsNetwork.Rd
2614e984b5c5aa40d9364d3542172654 *man/superTree.Rd
9cac90a57bbdef5d40f016648d431df9 *man/treedist.Rd
64399c9fb7fb25d103c25aa925ab7a10 *man/upgma.Rd
b97649fe8b91a0632a1ded89a6f43125 *man/yeast.Rd
9a8672b7759d360a54c251d1866b3e05 *src/Makevars
20d50d66a69b39d558c43c2f1ab2f08f *src/dist.c
a750f640db7ff1a3c56a98ccfe02041a *src/fitch.c
e4ea2207ff988529fd6b597c56edd3e6 *src/init.c
8daf78dc91797077f99017fbe9ac63c4 *src/ml.c
b4887b5a287b75b0636c37f756e593e7 *src/phangorn.c
2256cf09434a7ff05e750f4a11124aba *src/sankoff.c
0b18e27e3877621f05e6f78c89a0f5d2 *vignettes/Ancestral.Rnw
efd64c8a6ee13e6443a20adf473d17e4 *vignettes/Networx.Rmd
9608eda76927e9438fa12a63ef8692cd *vignettes/Trees.RData
a6ff44c68626895b856effc7e646446d *vignettes/Trees.Rnw
6af5f4d4c2e93469cc19d46a97ab5d0f *vignettes/exdna.txt
1ca8b1d97a011a9d0ecd9630d548dfb3 *vignettes/movie.gif
6e60535c60981d4f5492b73ebf7344df *vignettes/phangorn-specials.Rnw
aea5ba10f1d15d8fc389128ad1232b44 *vignettes/phangorn.bib
d3069d1eff9e70bed655b8962bf4ee2b *vignettes/primates.dna
