b4f52717cd56ff88f2922f31d42196d2 *DESCRIPTION
8b4f358b1bb90ee7ad46158369acdfb7 *NAMESPACE
017379855cc97c7ded57a144c3909219 *NEWS
39636112309b05ace74b2a346cc16ab4 *R/F234.R
7c248f8d14c2821eafc92145df9b4168 *R/Fst.R
bedae0b018a0c79b419f48f0dda5dd29 *R/IO.R
4e8e5d7e4edf1d125a7524b534edf1a4 *R/MMD.R
6ea2fd29cfe6178ece04bbf02ca98f74 *R/R2.test.R
9284bfdfa6084e4a662d6997f4c12cf7 *R/VCFloci.R
2b0c30239a2f8886578350f3a7011281 *R/allelicrichness.R
1089227cedf2bdec325b65fe5186be06 *R/amova.R
2ab4c73f376e83096c807e1767d8d367 *R/conversion.R
936ac5ab11cfd81b725a3c8c398f0a2d *R/dist.asd.R
ac0129c39a21ac189f30d41afc0cdf28 *R/geo.R
ecab75f2f852d12f6dc2d50f58540840 *R/haplotype.R
d91264f0be988e5c084db65520755051 *R/heterozygosity.R
7511be46ac5c58a664cbd6515e745f96 *R/hw.test.R
4315904dbee8a656e8a0959d12318dd7 *R/mjn.R
e22823d33ca3ee546246500b021ce007 *R/nuc.div.R
1e186f46fb1e5fc5b24119f8997d5f7f *R/options_themes_haploNet.R
5a6758d63c43b99092ee75d53761ea3c *R/plot.loci.R
9618de40a0bc87dc124a0c49e38bf012 *R/plotNetMDS.R
215db9edbdc18ae1ad5dee3869815afa *R/rr.test.R
6109855be0e66abe79e2e06f962be413 *R/site.spectrum.R
0ed51b7e358e7286abd0acf30b0fb1af *R/stairway.R
31b753ca34f3b8421f9653f821cafb05 *R/summary.loci.R
6888ed20ba859e38c49644353adc8465 *R/sw.R
eca76dd03f28d5a337765a8e3fcc1c81 *R/tajima.test.R
201ea02ceb2792b319ac2d1cf69651ed *R/theta.R
a649335fa07d87bfc9bd24aaa3d5108d *R/zzz.R
416319391d3a9bc50cdd919cf809a24f *build/partial.rdb
212bc32deac0aae7a46c711e045c0754 *build/vignette.rds
28851c59cc5535f917122a87b4808461 *data/jaguar.rda
ad12dc674e3012ec9d8b003ccb02f404 *inst/CITATION
a11595cb30ee91d7dc62e9a8d4637d6d *inst/doc/PlotHaploNet.R
f8495dbc0eba8c1556cc5fbe87f22cf3 *inst/doc/PlotHaploNet.Rnw
4ab70abb3a36de3214951d7feb1c110c *inst/doc/PlotHaploNet.pdf
51dc6e783c0218518e0529ba6aa59b85 *inst/doc/ReadingFiles.R
ebc75a2e3982f353707a0680d83631a8 *inst/doc/ReadingFiles.Rnw
a56ac3d0983b460eaf35d5b6048da61c *inst/doc/ReadingFiles.pdf
d579898d655f09bd98fd0d9d0e486a48 *man/F234.Rd
9f224fb4a2761eb78bf23b001e62424c *man/Fst.Rd
bc5dd68a2223cc35a808965454ec6518 *man/LD.Rd
fef287eac0eec0cd845a5bd6c11b63bc *man/LDscan.Rd
4cc088f0000a02bb268e079d2b1097eb *man/MMD.Rd
cbc53cd9777e7548f36d399ea3d52e17 *man/R2.test.Rd
39e62644628068c8c860202e71b71a7c *man/VCFloci.Rd
738957e217dfb1383f0699f18d935b63 *man/all.equal.haploNet.Rd
555f3f63ee73bfec38c3610f34d985c7 *man/alleles2loci.Rd
af62a558d921c9793784dcfc7e858f35 *man/allelicrichness.Rd
c40b741eb0a1cfaee53dbc524c753f26 *man/amova.Rd
b68d5272f35efcb1185c24a242c202bf *man/bind.loci.Rd
e0599199dcf46d3a69e224316bd92742 *man/by.loci.Rd
4b21a8294df8f1214d075911e3c4f56e *man/conversion.Rd
91d1777187cd26ae8de5a8da5e8a264c *man/cophenetic.haploNet.Rd
a15c082d56caaa1ab93d9bdf2a57dd84 *man/diffHaplo.Rd
f5895d7ce7ca26830c4471c71cac4bfe *man/dist.asd.Rd
db82a7c62f3b2bffc1f2b6fa063aa1cf *man/dist.hamming.Rd
6bf8595c60f60f41f285d5a60c590179 *man/edit.loci.Rd
994ee5aec7fc56b2cc91853badaae4d3 *man/geoTrans.Rd
36b80830f430ef080b8c79b8b9c0defc *man/geod.Rd
e716c00774d7308944ff8907f45a5b66 *man/hap.div.Rd
8f37055beb58c52d8f59697a091c99df *man/haploFreq.Rd
f9605816a2eb08def9b420c3e4daed02 *man/haploNet.Rd
79e63506637344665158f095ce25bcba *man/haplotype.Rd
143fdf553d40c4a77a0450a60275d534 *man/haplotype.loci.Rd
b97cd2d2f9056e89f1e3ac843c24c372 *man/heterozygosity.Rd
d9050020d9bc0d81861ec5ff453f11d7 *man/hw.test.Rd
eb78f42afb57ed515f36b2605245485f *man/jaguar.Rd
ae5e1eadb17cea84de5163b9ac3d8596 *man/mjn.Rd
01f395b3212098b8790b0a4e845f0fa9 *man/mst.Rd
548f41296eadae50db66b1184fcdfd76 *man/mutations.Rd
f9737fd9245d639a2944727d63169262 *man/na.omit.loci.Rd
3b87ea408feeaf59512d68e2b742837c *man/nuc.div.Rd
c43d69df38ae7ff32fb4c27090719532 *man/options_themes_haploNet.Rd
5567e7148787b80fa40577366a936c0d *man/pegas-package.Rd
f1138e498b9101ba93a48be19940dc8f *man/plotNetMDS.Rd
b849eaa277242050aebfd5c8048735a6 *man/read.gtx.Rd
7835e9350fd87adc379c3c113901bc9a *man/read.loci.Rd
fa45353c4fd06f46ea0684050871e4f9 *man/read.vcf.Rd
ae59483d964cf58cf362982726119031 *man/replot.Rd
651f6ccff60df1161dedebb9a404dda2 *man/rr.test.Rd
bbec29e8bc3d0760f4f259a3abc1043d *man/site.spectrum.Rd
2d1a79bddf00f04ed2337b1cdef1a25a *man/stairway.Rd
72de3bbcd9d8db4e54854861c136f53e *man/subset.haplotype.Rd
488184bf9c344b6dd3a8ec3f4a8263a8 *man/summary.loci.Rd
79b167b2fe67b8e3639b08bb76694489 *man/sw.Rd
1fba696d393e38e6925252c166284ce6 *man/tajima.test.Rd
f1a6ea2bf2169cc5846ed356944020a2 *man/theta.h.Rd
aa7aeadb72990f457212669f28aa2562 *man/theta.k.Rd
4303018e4c53ee482f4d8e970adcd313 *man/theta.msat.Rd
1b373c22dbf415819bb002850d9b52f5 *man/theta.s.Rd
be86569a182a335821927d3719fa9a96 *man/theta.tree.Rd
5c37f7454999fbc93657d9bad00bcf47 *man/utilities.Rd
799f5a475b1415b09464f3dca0a56b0c *man/write.loci.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
7abd58d4a2c9b9fd5b6aae5c596ec500 *src/pegas.c
f5fbde4f4dddd28ee5db87d314568a6f *src/readVCFbin.c
ca521b4823423ed4af9bcdbcaab3a635 *src/summary_loci_pegas.c
f8495dbc0eba8c1556cc5fbe87f22cf3 *vignettes/PlotHaploNet.Rnw
ebc75a2e3982f353707a0680d83631a8 *vignettes/ReadingFiles.Rnw
4e747ae4c6fe4f482803d4335aaa5af3 *vignettes/ape.sty
23a94ea02f8007d6c7689ddded7f2a0b *vignettes/pegas.bib
84278f2d0229fb87dda308b1551cb2a3 *vignettes/tata
2964da1756e3a2c2bd02c7235cb2fa2f *vignettes/titi
619c909499f3a837b8c62484905aa7bc *vignettes/toto
e59fd7d2d1e692488df7701530016ec0 *vignettes/tutu
958cceda906e9b37a685a4340d8d0b88 *vignettes/tyty
