d791728a073bc009b4ffaf00b7599855 *COPYING
35626f0cde1d4c386d0f5899934fb6d0 *ChangeLog
ee59962ff678af26989410ddf0a52c52 *DESCRIPTION
ff95ce9f6468e92a652bdd29ccd2c9dc *INSTALL
5417a6b9a79797c4e6da0a5aa51450c5 *NAMESPACE
3a03b7b24af7f63bd8d773abc7aa61b5 *R/00-classes.r
f7a7ff9121cb2a34c4326796906ff9b6 *R/000_globalVariables.r
80a2eb8ea451378a8f7d0cc654f79d25 *R/01-generics.R
50c9066e3bc3d2ea83a86b2ebdc9a3eb *R/04-misc.R
8b705aeb98454ac9b1700cfcd5262fcc *R/accessors.r
7e10a0d4ac628dfbbec04c76f1da4a21 *R/as.ddmatrix.r
d65bafa07477be470de2c90e44cb459c *R/as.matrix.r
a99d11e5e52f532993ed4b3a2196c7ee *R/as.vector.r
14db92ffa20462861e98d11024d926a6 *R/constructors.r
9609929fadccad13dd350bad8b0147d6 *R/ddmatrix_[.r
0c440eec11bd5aa2d554bbe6cc1a4c32 *R/ddmatrix_apply.R
ae21379a898a89c0063beca16c597320 *R/ddmatrix_arithmetic.R
82a3a379faf8f1f6b1a1a1adceb5e486 *R/ddmatrix_bind.r
32534812ab7e41d578728fa25c83b0d4 *R/ddmatrix_chol.r
c0b0c146f27df7c32903ac0f9de755ed *R/ddmatrix_chol2inv.r
2f977f3fca06157e7eeb51036ab44fd0 *R/ddmatrix_cond.r
b3bd8975f8f41f97b531736c69d5d218 *R/ddmatrix_cov.R
c41fe21d5b78463b102b6ad1c89d6da8 *R/ddmatrix_diag.r
421c09f8f661095609ed03f3e86d5283 *R/ddmatrix_eigen.r
78ef690ebb38dd8b3a885346bef98077 *R/ddmatrix_eigen2.r
7f8b63090b329fb5adb913ff2b806cfd *R/ddmatrix_expm.r
2eb11c07c0ca1e022e63ab2595bdf699 *R/ddmatrix_head.r
973972724362f3ca4e020b93186eb9db *R/ddmatrix_isdot.r
66513b154332a40a2c6d5055a8f3561b *R/ddmatrix_lm.R
ca5529a0c7a398467a9cfd52cb8243ac *R/ddmatrix_logic.r
217f619da72caf23d539d61ae30ffd69 *R/ddmatrix_lu.r
4598b42c0c9fd1fbe30f12e73e8b04da *R/ddmatrix_math.R
50d5b815b6c8c62463a79bf7ec2fcd42 *R/ddmatrix_matmult.r
04dda24760e2b7899700fe6ca56eee32 *R/ddmatrix_misc.R
cb16dd430bf62935f3802b264511d306 *R/ddmatrix_na.r
616985ca63865c50c28eb6f62d929253 *R/ddmatrix_norm.r
1ef1deca4420e1ce5f45d716dce5d43a *R/ddmatrix_prcomp.R
954196a513472e1917e70bdb99063040 *R/ddmatrix_print.r
94f91bae9291bd460ca10c01a87a0530 *R/ddmatrix_qr.r
36ad722ee24ce637fc1c35a5a55882b2 *R/ddmatrix_redistribute.r
bc49dd38386ad2bdee0ab56a8fd99d98 *R/ddmatrix_reductions.R
a6fb85963e35d5daffb14d111fe9d86a *R/ddmatrix_round.r
1b4aefd72585aed2e1f3883e38404f04 *R/ddmatrix_scale.r
de1ecd19a7bc3a3da19e8c157e8595ab *R/ddmatrix_sd.r
2f4306308956371e9c8fcb2de624efd5 *R/ddmatrix_solve.r
d432cc14a256ad965dd48a69df79b625 *R/ddmatrix_special.r
7c7e5ef4ed1509d636774910019e9027 *R/ddmatrix_summary.r
02c41c2bef9e3551e7c2e041366288bf *R/ddmatrix_sumstats.r
bdcbc65254a3ff00846ff5ff95411bf6 *R/ddmatrix_svd.r
9589049041abe755f1edd7981d079b3b *R/ddmatrix_sweep.R
26e6f802a3f5f1d41b017767001eb0a7 *R/ddmatrix_transpose.r
47c744b37cf482689f59e11aaa66402a *R/ddvector_arithmetic.R
d61cf553f982038b45a2baa0137ba7f1 *R/ddvector_misc.R
f6dc59c62193b0fade7c4c443451528a *R/dsmatrix/converters.r
181199ee302dd1f22d348242c956b991 *R/dsmatrix/dsmatrix_algebra.r
a135613eb3cd629b7f160534c7a754df *R/dsmatrix/dsmatrix_expm.r
24f0f1ed8a455bed22cf9476da172fab *R/dsmatrix/dsmatrix_misc.r
c1feecc0d61d4aad1f516000172384e6 *R/error_stuff.r
6ef7372852f3efca812cd4f909afb36f *R/getLocal.r
4b1ffb34c37ee3fa9486d0cf237fe91e *R/isSymmetric.r
1724e06d21f0dabc0dc33d92cff1f68e *R/ownany.r
f40b085be2189cbd72bdb8f0a400a050 *R/pbdDMAT-package.R
a48bb7dbcc059639fb8deb293fdffbf8 *R/sparsity.r
f1417901d0db8284ffe37cd0b89c4af4 *R/test_utils.r
0b5fca1783cadd8cc23cf7495221e34f *R/utils.r
f57e03138f3fdb9ae91cc22fe17b7008 *R/wrappers.r
982530df6a4a0d616372995228d489cb *R/zzz.R
f5b93ded06d8aff2c53c4e07ca477bbe *README.md
91b9304bd8370f2054545d00c85cbe05 *TODO
3077d5fa2707407a60557946fb2501b4 *cleanup
88bdd0b3daa7bd9d7eb9ecff18c29ac7 *demo/00Index
fe8c9a0320bb4660531efb6ad6fd4a5d *demo/basic1.r
ff0e0489e7e2b1426f4098d26daefa1f *demo/basic2.r
3c8e679dbd8de62bbc0d53887a0a8151 *demo/basic3.r
c4f883b7f2b3c58209726e4eff6dfe4d *demo/cholesky.r
1bf789e209ad1e2f753383ccc76c1542 *demo/matprod.r
df80085101abb9b4e426d06184a4f5e0 *demo/reductions.r
01b14bb3eb8c16d52ee3963f4ead4f7b *demo/solve.r
c59ab82e6c39c316f04555216d9b7433 *demo/svd.r
0121b27512e0ac9ecdcb48ce94908f12 *inst/CITATION
65aeb0c1d4a375b6d5938dc10b3cc1ad *inst/RNACI/RNACI.h
3c853b7b08391a116a479b14d95633ae *inst/doc/pbdDMAT-guide.Rnw
5aa68ea217445b95472dcfdfc8f5885e *inst/doc/pbdDMAT-guide.pdf
2e30d263f74467c561ed37f448bbd844 *inst/examples/pbddmat_additional_example.R
dcca089e12a6babc3a8d2da66579de9a *inst/examples/pbddmat_advanced_example.R
861353e82869b23edf404eb58b60bdc4 *inst/examples/pbddmat_example1.R
dcca089e12a6babc3a8d2da66579de9a *inst/examples/pbddmat_example2.R
5e14ce3af76caa0278a281f7251f688d *inst/tests_batch/10_reductions.R
0f46a7cb8a355b05d3374f298ce16fa2 *inst/tests_batch/11_arithmetic.R
ff0dd581fc219ebb7dcd8b6146ea28c8 *inst/tests_batch/12_pblas.R
dd45de0a5cdeb46dd15cfceb63027b78 *inst/tests_batch/13_scalapack.R
2bb14ba6094b3d433eefd1a823571648 *inst/tests_batch/14_stats.R
47a9d48574da53870ad961180530426a *inst/tests_batch/15_qr.R
57c9b6702d5421b5e83d976fa4269552 *inst/tests_batch/16_lmfit.R
a39c8c8ff83062a1e10f34e053ebf39d *inst/tests_batch/17_norm.R
43b4896179cb960b312f711bfc98aab2 *inst/tests_batch/1_extraction.R
e0f36354fc263fc641d8f12a902d7bd7 *inst/tests_batch/2_NAs.R
e6ca28cbab3c69ce1d35270f11ca4439 *inst/tests_batch/3_rbind_cbind.R
03fea660e5dd98b1d71d516f315d562b *inst/tests_batch/4_construction.R
76ebde389389b885ac72fe5111560d17 *inst/tests_batch/5_stress.R
aba7d5f09860f6ab7a0f31d3dfb1c158 *inst/tests_batch/6_redist.R
95338fc0490399725c3d1069f05e154f *inst/tests_batch/all
61e95635faeb99710e57dcb6c7b8c635 *inst/tests_batch/expm.r
7d49cca96ab47551e8205f7ecd74d22f *inst/tests_batch/run
62627bed97212c899f750ff25598b565 *man/Comparators.Rd
b03769d67dacd4cf8896b23d89e1d10d *man/Hilbert.Rd
e2234df62d82022255905fb90aead42a *man/accessors.Rd
7a2e7ade07d0d18a6211ff67cea431a4 *man/arithmetic.Rd
637f764c6eedfcd1b6e0daf97fb7bdba *man/as.ddmatrix.Rd
51bec857d86befa93972c6ff20bf710c *man/as.matrix.Rd
12be110721d9729a80bdb380eec11625 *man/as.rowcyclic.Rd
1958242b138d4fa6fda9d1d3b28608d7 *man/as.vector.Rd
4cae0902fcef37beee56a2662fb2b149 *man/binds.Rd
b9780ad087bb79a1184f26baffdb106f *man/chol2inv.Rd
6e02575ab52308df54d1081754908bd3 *man/companion.Rd
7660eb52620f9eb464adae7bafafa82d *man/condnums.Rd
cab94ee01c1efa1bb5a46c30059ecc10 *man/control.Rd
088273b5a97ecf9a4b33af43a4f9e6bf *man/covariance.Rd
1687f5bf5e6c3d21ddd41db5d160295f *man/ddmatrix-apply.Rd
7d23ee6804bf0b145cddcfddeac94f8a *man/ddmatrix-chol.Rd
dbf2f0787e059c39e432f174dd759bc9 *man/ddmatrix-class.Rd
82c8d0f37a12df532620245d265e955e *man/ddmatrix-constructors.Rd
f40318487b02af9656ae8a9547a3276e *man/ddmatrix-eigen.Rd
cce90b171609e2f26e3c6f1478a59bf3 *man/ddmatrix-lu.Rd
9c473cf0b21d5cc832bc46ded5d7ceda *man/ddmatrix-norm.Rd
d007e285e8b1406a811a29a4e062b7ab *man/ddmatrix-prcomp.Rd
96ba4c132c8ba2f38dab4ce4308eb4ba *man/ddmatrix-print.Rd
6e90486d91e958a81855eb6e94db46ed *man/ddmatrix-scale.Rd
599ecff4479494bac8d7fb0c3e84e59b *man/ddmatrix-solve.Rd
661530224c6cdc6ba06a25e895e09342 *man/ddmatrix-summary.Rd
cd1f07890dbf773231868001166e97e9 *man/ddmatrix-sumstats.Rd
4c9946f18f2dcb252c57381c39ca6f16 *man/ddmatrix-svd.Rd
a98b02e0844dc1b582bb3117c783bca0 *man/diag-constructors.Rd
2f8f6d4d216634bf6d8ea301f477f9ce *man/eigen2.Rd
5cfd49f37fbbd4815460f12ee7f075bf *man/expm.Rd
3b54df15da111472a7eecea70fc1c81d *man/extract.Rd
1d4abb82a4b906794c24f05374de20eb *man/getLocal.Rd
73e3dbc48156756e73016f7c4f23d71f *man/headsortails.Rd
f50afe1ec57d8c17e4327c3d110821c2 *man/insert.Rd
a70f91cc16c723899ddfe4c6537cb0af *man/isSymmetric.Rd
6d96e967f60113c23f2a2e70b1218c42 *man/isdot.Rd
76ebc640f3b16422d99d979a89684a28 *man/lm.fit.Rd
4d92297f77bd61c72b07e8149cb83d85 *man/math.Rd
46dea73d5b198458b4fc9947af0fea1f *man/matmult.Rd
1f88675ee325eeb78a2c81028b79a0d5 *man/na.Rd
efb2b6243237c1c0fcfc323329627a5e *man/pbdDMAT-package.Rd
705e636232d44877dd490bd80b0f4cd8 *man/qr.Rd
4a406a07bff73d59854f343dce65299f *man/redistribute.Rd
f3b7809a56067a09a737b158430463c5 *man/reductions.Rd
0b1dbd3489d0506c21eb1d94c7c7287a *man/rounding.Rd
0afdc28bb936ff2d902512f3be7cd701 *man/sd.Rd
fbd65dc6b1ea14592ffa112569bab237 *man/sparsity.Rd
7f2cbc95c2a17d77c30bd8bd17ae8dbf *man/sweep.Rd
b97a9c3cb49872040699aaf34f8ae266 *man/transpose.Rd
5da1e90013fe2ad92a879a1423b7b8ec *src/Makevars
116bbd21d6edb65ebd4824de2426c987 *src/converters.c
f6a035771816283604e7486530a72b1e *src/dmat.h
bb6b75566049be2efab9110d100beea0 *src/sparse_utils.c
9bd15ae010620b27e7cdb7c93030967d *src/util.c
89471b74603ec9746a0d06f048002da9 *vignettes/build_pdf.sh
472ee4a19022d83336d66e8b4daaf02d *vignettes/include/00-acknowledgement.tex
95561ba9dcd8d6039ee2e310eb0457da *vignettes/include/00-copyright.tex
9ae4c5cb1963b6f3087c086300f8114e *vignettes/include/00-zzz-abstract.tex
4c64c631f11ad814d72b2e3e43b7c9b0 *vignettes/include/01-introduction.tex
b204edb54e5caecc96843f1b546cd814 *vignettes/include/02-classesnmeths.tex
7bca589d8f8db1ca55a5563046d3e515 *vignettes/include/03-users.tex
84a87c1d9ed97ddcf3a0bf40ec893eb1 *vignettes/include/04-examples.tex
e66a4568f1e923d13ee4964df2499284 *vignettes/include/05-advanced.tex
bf02248e28975ae6080d4045bc8be4da *vignettes/include/06-adveg.tex
4f018040627dfa2aedb925703fd51449 *vignettes/include/07-developers.tex
27a3024ad9b857ef3679298b6c6e3c68 *vignettes/include/pbdDMAT.bib
c361b262c34785162574e5dcd1fc559b *vignettes/include/pics/uch_small.png
4c09136bfdde395e3cb5c4c20d45b0a1 *vignettes/include/preamble.tex
77d0c1a38b9e639ac92e19e817e4c633 *vignettes/include/titlepage.tex
3c853b7b08391a116a479b14d95633ae *vignettes/pbdDMAT-guide.Rnw
