fcbd28aaebe629dce373ebc6c5d7da9e *DESCRIPTION
637e88461df3e5b7224845189cb3f31d *LICENSE
8220e5fb0ef2f3d78ac85f475254821f *NAMESPACE
798cdde547326f75fc6ce31ba58439cb *NEWS.md
e83049c1f84cd6781e1581ad8cc7c992 *R/active_snw_functions.R
ad0fe0a81305548e49a3af33bdf537df *R/clustering.R
fdff6157e285e00378c2932e62ddd733 *R/core_functions.R
b44d224d60dcffe487f3553f79fd444d *R/data.R
90a51455dae120021e8ce69408427062 *R/enrichment_functions.R
677458abd19e5e274af35a27c252f003 *R/pathfindR.R
5a216fd969ebc9db65fdd9993e69b0f4 *R/scores.R
52bd625ae066c1528db8954d9f52ddec *R/visualization_functions.R
aa8456d5e40cc930902524b5e59a3aa5 *build/vignette.rds
6cac67bdcd6ed82d816febf21884b093 *data/RA_clustered.rda
802cfde2f633f4b83e4d420ae89eb6cb *data/RA_exp_mat.rda
45d3c9fc8c70d89595f65875e5f983a2 *data/RA_input.rda
1c330226688f9fd3038e68daf5a860aa *data/RA_output.rda
d311f907f99b95103c9e80dc7ab16b53 *data/biocarta_genes.rda
07530d05a1d8b6d5b12b0ed995ccbeb4 *data/biocarta_pathways.rda
7427188e7f17a6c37abbfe85a3b21f61 *data/custom_result.rda
f1207f72494843d1f93717805f1a3c64 *data/datalist
687f84ac091d0f2a7d6c9d4740906ba4 *data/example_active_snws.rda
19b338c6369334055f10caf41e5d0815 *data/go_all_genes.rda
2fcd008318a6825c49edeca34b0d9b02 *data/go_all_pathways.rda
d59e479686e0a8fc8cded6c8390347a7 *data/go_bp_genes.rda
bff1347501fbd3b7d6eb325a05468b20 *data/go_bp_pathways.rda
af923135a925f7e85169b0b7f9495a6e *data/go_cc_genes.rda
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11ab7ec716907decc2c14cc8b4b05161 *data/go_mf_genes.rda
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3d716d893564a9ab65d13fbb784910d1 *data/kegg_genes.rda
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7b850aafcd7c380332674a2b041f39b3 *data/reactome_genes.rda
795c3efa2751c3c598d33c6349b14138 *data/reactome_pathways.rda
759ff6a955637632be9f38df89ea7abe *inst/CITATION
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9b65fa19fd39f1149773f43320a6b715 *inst/extdata/Biogrid.sif
679f1c8084e7d30a0dc81709e514298a *inst/extdata/CREB.txt
c804db2e6802b505a35236621f393543 *inst/extdata/GeneMania.sif
7d1a2a950fa4f1d00af771b59388c804 *inst/extdata/IntAct.sif
3e8182b384b72c96124777f48102d274 *inst/extdata/KEGG.sif
4f97ce8df0d7dbfa3746e3192c639596 *inst/extdata/MYC.txt
a23abda2700faa198d10b4ad270fedee *inst/extdata/resultActiveSubnetworkSearch.txt
a7c259ca331087f1923fec34d2153a36 *inst/java/ActiveSubnetworkSearch.jar
9e022ef9879f6c105d136c992f74eecf *inst/rmd/conversion_table.Rmd
3d2dd9756eaadcfce69ac7dfccdfecef *inst/rmd/enriched_pathways.Rmd
d86c1d08cbf482cd2560effbd9096b03 *inst/rmd/results.Rmd
5aefed1e6692c2d69686853966feb72d *java/ActiveSubnetworkSearchAlgorithms/ActiveSubnetworkSearch.java
e1add96c381119ca5c12a4d5ef19f031 *java/ActiveSubnetworkSearchAlgorithms/GAIndividual.java
4fc331bf185741e6851c5f9bba4f1a77 *java/ActiveSubnetworkSearchAlgorithms/GeneticAlgorithm.java
c489bd5c01cf42e159e1ee3809ac3700 *java/ActiveSubnetworkSearchAlgorithms/GreedySearch.java
5e71444c2eba521fd96893f9cb200b87 *java/ActiveSubnetworkSearchAlgorithms/SimulatedAnnealing.java
f0aae5d87de27c5883efa7f10a4f0764 *java/ActiveSubnetworkSearchMisc/Gaussian.java
1de145f422767954ae5000541addf3a2 *java/ActiveSubnetworkSearchMisc/ScoreCalculations.java
b8cea43205699d2ced1cdac423e32baa *java/ActiveSubnetworkSearchMisc/Subnetwork.java
5577bdbec43ecfb930293c24a5c3ef2e *java/ActiveSubnetworkSearchMisc/ZStatistics.java
9e607a52c81e197f7ab1025b5a3202b1 *java/Application/AppActiveSubnetworkSearch.java
ee4bd21bb3909f75dce8cd63c620b483 *java/Application/Parameters.java
d4315317f84edad39baa6d6ffba98b50 *java/File/ExperimentFileReader.java
4d004757ba404d6c16b73bfbaff9fef9 *java/File/SIFReader.java
91ad54d743857dd002a704cf50159e0d *java/Network/Network.java
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fb9a95c51d77dbb3580f57c63c9582ea *java/Network/SubnetworkFinder.java
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454b00c03338971f5d7ef7c198000496 *man/enrichment.Rd
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438520576f79ecd44059aefb91e5bbcd *man/enrichment_chart.Rd
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0c57f1a8cf4769f34ef5d664ba65e960 *man/filterActiveSnws.Rd
7b50541400603bc9957b5608cab1d29c *man/fuzzy_pw_clustering.Rd
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aca4b6fd0c0b96fc337cb3af48626d6b *man/go_all_pathways.Rd
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3610fadf1b8868ec0485a71b744bad02 *man/visualize_pw_interactions.Rd
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6a4418e11f49f55d05b34d273c17bdc2 *vignettes/pathfindr_manual_exec.Rmd
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b4011af00a8d671bf049aa9e1e46bdd1 *vignettes/pw_score_hmap.png
