1401f7fddd0391149627236007da68c7 *DESCRIPTION
637e88461df3e5b7224845189cb3f31d *LICENSE
87a2639299bb8a715f8d7f3371e28089 *NAMESPACE
3757eed105558fe49259b95b2a4e2e95 *R/cluster_pws.R
c1da02a2ea132678ae599159ece5b127 *R/data.R
d8f8cbe8739351d744df678b7d6fee49 *R/enrichment.R
77274a7f3ecd7e83409d4d8131794394 *R/input_processing.R
aaa820a7f9ffc485ec14ef3fe9c55392 *R/parseActive.R
d92b472702dcdcee964918062aaae357 *R/pathfindR.R
e6b1f5a31a4b9f56d2aae09a44156f56 *R/pathmap.R
5a3d1e5b5fffe83777a20aa7c7932edc *R/wrapper.R
ce3948c422ca049f4287ef2078781a77 *build/vignette.rds
89e18386146e112e0b23c2b2f07186cd *data/RA_input.rda
4e8cd2b3e7a7ece26ffdfa216e9f7a71 *data/RA_output.rda
9f834ef6406c8a276097d527012a3339 *data/genes_by_pathway.rda
4846397526c93621ae1f6b29d8bc2fd9 *data/pathways_list.rda
b51f088ea79f7ce4fbb7cbd2639bdda0 *inst/doc/pathfindr_vignette.R
e0ce8392486b0a5c2e778833381abf3e *inst/doc/pathfindr_vignette.Rmd
6069d35abeeb2bbc26bff67bba5e4ec9 *inst/doc/pathfindr_vignette.html
9b65fa19fd39f1149773f43320a6b715 *inst/extdata/Biogrid.sif
c804db2e6802b505a35236621f393543 *inst/extdata/GeneMania.sif
7d1a2a950fa4f1d00af771b59388c804 *inst/extdata/IntAct.sif
3e8182b384b72c96124777f48102d274 *inst/extdata/KEGG.sif
a23abda2700faa198d10b4ad270fedee *inst/extdata/resultActiveSubnetworkSearch.txt
872f734518f4acd2c8e0aadcf7dd614c *inst/java/ActiveSubnetworkSearch.jar
5c342d5f748bf01789957f4f90f8c592 *inst/rmd/all_pathways.Rmd
2554f35c07b902915b4b405f63d585da *inst/rmd/clustering.Rmd
826b785aea328d67a2e3db4d12e2d44a *inst/rmd/genes_table.Rmd
b80db9a05c60a7a91af33a56afb2944c *inst/rmd/results.Rmd
5aefed1e6692c2d69686853966feb72d *java/ActiveSubnetworkSearchAlgorithms/ActiveSubnetworkSearch.java
439593bca03ca14e803bc31faa18deb0 *java/ActiveSubnetworkSearchAlgorithms/GAIndividual.java
4fc331bf185741e6851c5f9bba4f1a77 *java/ActiveSubnetworkSearchAlgorithms/GeneticAlgorithm.java
c489bd5c01cf42e159e1ee3809ac3700 *java/ActiveSubnetworkSearchAlgorithms/GreedySearch.java
5e71444c2eba521fd96893f9cb200b87 *java/ActiveSubnetworkSearchAlgorithms/SimulatedAnnealing.java
f0aae5d87de27c5883efa7f10a4f0764 *java/ActiveSubnetworkSearchMisc/Gaussian.java
053aba2b6b176a4e912c3b59ceebec05 *java/ActiveSubnetworkSearchMisc/ScoreCalculations.java
b8cea43205699d2ced1cdac423e32baa *java/ActiveSubnetworkSearchMisc/Subnetwork.java
5577bdbec43ecfb930293c24a5c3ef2e *java/ActiveSubnetworkSearchMisc/ZStatistics.java
9e607a52c81e197f7ab1025b5a3202b1 *java/Application/AppActiveSubnetworkSearch.java
ee4bd21bb3909f75dce8cd63c620b483 *java/Application/Parameters.java
d4315317f84edad39baa6d6ffba98b50 *java/File/ExperimentFileReader.java
4d004757ba404d6c16b73bfbaff9fef9 *java/File/SIFReader.java
91ad54d743857dd002a704cf50159e0d *java/Network/Network.java
f516e3c30a9953abaf0f48ab54de9a9e *java/Network/Node.java
fb9a95c51d77dbb3580f57c63c9582ea *java/Network/SubnetworkFinder.java
b60f08affa418133463b0ca2aa24cfdf *man/RA_input.Rd
aa154b6ebeee7b6e13b2a8585aa9e238 *man/RA_output.Rd
f468b76bb22b6f26f1768dfb117d2eef *man/choose_clusters.Rd
38d5ea776471d2d2fb7ef6a9fa6ee854 *man/cluster_pathways.Rd
b779032e8577cd3e248699d85029a8f5 *man/enrichment.Rd
92c0d9b15a169dd360fcffbd22a72c4c *man/genes_by_pathway.Rd
b9e03051994c62dd48a4d35ad5293565 *man/input_processing.Rd
a06e9d7d2c44bf4f8a13a09b176ff0f4 *man/input_testing.Rd
15a9dc6e2bb0d10d8f3a37993c102cf6 *man/parseActiveSnwSearch.Rd
fe1eb71a86819302ba960d10f0ef9f0d *man/pathfindR.Rd
d24297248cedfa64815328ca6cd2c94b *man/pathmap.Rd
764e8518891562c620b872d8f858a699 *man/pathways_list.Rd
eefdfc14dd06ccbc55da9aaf41b6ef4f *man/return_pin_path.Rd
806abb1edd1ac870afcd232962f85862 *man/run_pathfindR.Rd
26c35218f0d974d1921ae8c1c7a68698 *vignettes/pathfindr.png
e0ce8392486b0a5c2e778833381abf3e *vignettes/pathfindr_vignette.Rmd
6f5382d8ed5fa6a83da401e201b96dd1 *vignettes/pw_clustering.png
