a3734d263aab2bd42adc8195f1ac9485 *DESCRIPTION
47ccda4008e13ef83da9414ad7c478c4 *NAMESPACE
5b5df8595955d1db4f4bbd5748531b2e *R/NPOdata.R
1cee5df3e4b27403989cd45d626595d9 *R/NPOpop.R
c5036ad6e236f3568c69bb21b99c5aff *R/RcppExports.R
e1fd285e6ad85f85a9080619b708d669 *R/addClasses.R
3d1cab9f7d218d7f35260144987e34b3 *R/addContributions.R
89b7910fd38b00734d0c03fe0ff35929 *R/agecont.R
fb4147b53bdb212f7fd2a98f6a06f299 *R/bc4candes.R
a93b140e726c5e347b7660cf1ddc2d90 *R/bounds4cand.R
d003dd4a84cf3c584624809f4fd14957 *R/candes.R
04b3e8223fdb2004e924bf6d5c02840d *R/characterizeBreeds.R
8db5e2a7c4789352dde60c559f288d64 *R/characterizeClasses.R
0331d52f2d21d6aae9b1e11f2bb196c7 *R/checkbc.R
582882e5002a2b456a22e8544c3aabc9 *R/checkcon.R
1d623b536b358b051622ab1c32c62cdb *R/checkcont.R
2b1549f309d9f9888f20610eb5bc7426 *R/checkphen.R
47948ddac862a20c296d07092d52fa73 *R/completeness.R
f1bc6c30ba8ad75ed7ab3045ede28501 *R/con2df.R
0e823e5814ff033fb8b5844f3b4cbdbb *R/conttac.R
8db7cc5222d382b4b5f1ea88b1769d42 *R/extractKinships.R
b6c39ddd37d3d0503de6343fb9bde901 *R/f4cand.R
e936a3e1a826d53f0ce468635b0e3736 *R/freqlist.R
9d938fdf1e2d90a725babf26e21408e0 *R/fun4Kin.R
abf8e168a1efe338de9a458d2c908a23 *R/fun4KinatN.R
c22fbb0ed9c06273f103e3d974e4590e *R/genecont.R
5ee7f764084356953b5fc3c577f42ab2 *R/genecontALT.R
15103787b52c96a008d6763deb37f35e *R/getNe.R
3a44a59f6c311f6297ff0ebb2fcd702e *R/getcskip.R
606a863f464bb3129ec39b7c95518f97 *R/getskip.R
307f50e092914daa61ff63696631ac91 *R/gettraits.R
a2f24122671496d9b7f4dcc9eddc397f *R/haplofreq.R
56cdae60148335f2ada146325da81231 *R/lc4cand.R
337833fa16126bd9cc4a121a14d8a009 *R/makeA.R
b53239bc175c25b76efb4bc99b48d384 *R/matings.R
8aab5a027936e1994de0c1f056bf0338 *R/meankin.R
e696d999aeab84964e1a714ab616f0ad *R/noffspring.R
fa5e5c6a4edf95ace6ea3e021329217d *R/onAttach.R
0b4c62f8d0205b084451f64694c41634 *R/opticomp.R
c500aaa627c55f6c359d39fcd2702738 *R/opticont.R
fbfe520b48abf0a579f23f6787d5a2a3 *R/param4candes.R
072330784c15c1b4253350bb63ff9176 *R/pedBreedComp.R
e2276c02fb255f3d6b74351cc97fc07a *R/pedIBD.R
9b890da868b577aa964e3d61978a7698 *R/pedIBDatN.R
285d08b87a548df904ebcd09e6d4e0ad *R/pedIBDorM.R
8e7cf52be586ea17bf6f9ba52be277f1 *R/pedInbreeding.R
fa7a566f1bc97e2034d9b4b212f0f357 *R/pedplot.R
cef03d204b37cf438af624baa276d10b *R/plot.HaploFreq.R
bb9722edbc57da52b0b1ce1a9a112ad4 *R/prePed.R
b3a863c9e05cb85772e7ea51e1b115c0 *R/printParam4candes.R
0a6d902c0a36ff83224d1e87a0a2df56 *R/qcrc4cand.R
b0215d6cf961d8cab45e42f758c91e1b *R/read.indiv.R
64888d37ffceb62b9dd86e048b167704 *R/sampleIndiv.R
343fc1d7aae54f2031c097752fc98723 *R/segBreedComp.R
a50a074573cbef3a60ecae0ade520fc6 *R/segIBD.R
e9592d62b8d4aa8f8876ede4e0bc8bd7 *R/segIBDandN.R
74501eb1560e497abbceaec5c843e240 *R/segIBDatN.R
a52ab93b131a51117301d0e2a8b25d94 *R/segInbreeding.R
7cccbc923868b536209f389b6244904d *R/segN.R
c4a2a1d4f14ac74d774411bb6062cb69 *R/sim2dis.R
0ff7879d5b347cadf44e7358f3d6b630 *R/subPed.R
5ae28ef66444a069538076b31c31250c *R/summary.Pedig.R
9315081524a9c03eadf4663d234f9c45 *R/summary.candes.R
80a8e015d25e638a5f80ad5ce4ce40c5 *R/summary4opticont.R
23345d3ef673806fefafe1b1d3b6609f *build/partial.rdb
4ac41751d63d2ed669efa4401a6564c1 *build/vignette.rds
7a6d6df67672de850b5ec1606df2891d *data/Cattle.rda
8666771a2a9b075ca81403e5123cf2e6 *data/ExamplePed.rda
51fd01616bd051b9688911dca75dbc09 *data/PedigWithErrors.rda
c5b945183c50803c0430fb0fbac67c17 *data/Phen.rda
1b8251fae6fe1441b25153a18c576394 *data/map.rda
db0c2aded208c11867bd119c67f1c5bb *inst/doc/ocs-vignette.R
16fae7ed8269a18c689b4ef635a9ec9d *inst/doc/ocs-vignette.Rmd
9f371e7d160479168b0bc64c86ca6d6a *inst/doc/ocs-vignette.html
ce41348933b0c059d51b7821115260c8 *inst/doc/ped-vignette.R
2b756a03917a0539469f556a1adba187 *inst/doc/ped-vignette.Rmd
c8b62343fd756fa99e2bac973e3758a1 *inst/doc/ped-vignette.html
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2aa549bc3253666fffbbd2e168c47619 *inst/doc/ped-vignette_files/figure-html/unnamed-chunk-7-1.png
f8555c46909c785c12d756d628121b8e *inst/doc/seg-vignette.R
d12c362bed4bc28cf69b63f5f4d58522 *inst/doc/seg-vignette.Rmd
a6754e40603d7d2d3d75241e92f8a6d3 *inst/doc/seg-vignette.html
a85bcc1df1a8433bca843017f95404c5 *inst/extdata/Chr1.phased
1c37fbd6edde6eb544b932b372e65923 *inst/extdata/Chr2.phased
8e83e08427b32de8eb5f817b70d027cc *man/Cattle.Rd
c16062ca4c6d3206c4c3567aca546baa *man/Chr1.phased.Rd
ac7d45f2605d40401d4d60bb39e4c27e *man/Chr2.phased.Rd
38a3b6005da4d5bcebe2bf66e40d14ed *man/ExamplePed.Rd
3dd3a3984292ad3f0ca2ab0ae9b7c79b *man/PedigWithErrors.Rd
3f17fe5ea848614e550be368b48099c3 *man/Phen.Rd
d015e8ae8884b5861bde57e67f2a77fd *man/agecont.Rd
94cd54e73d494d7cc35d29fc0c000588 *man/candes.Rd
e851398e4498f1504456ee1da0b1df89 *man/completeness.Rd
bb9b51b31aeccdc15731c9a1c2d91b70 *man/conttac.Rd
299eb24197e820a14fdddf621247786f *man/freqlist.Rd
743614cd5c9f1702b9c6c1cf59e19a61 *man/genecont.Rd
9b985378f58a7d540587d1c96a23ba28 *man/haplofreq.Rd
8e6682b917d52a78fc1e8db12cbfdf78 *man/makeA.Rd
708b70f7515e6be9b87876b2f827f356 *man/map.Rd
04e14d417816417230440ef16c30145c *man/matings.Rd
9c02d298dc432741ae7a26ecff23d42b *man/noffspring.Rd
b8566899dd3902f48479de4d92aeec42 *man/optiSel-package.Rd
f63a8be6d5f1afb1bc7cc518c0230f7a *man/opticomp.Rd
684e19cd44c3501802255928545185f9 *man/opticont.Rd
8da8e48977c6b177ad7ce9e18ab91719 *man/pedBreedComp.Rd
bcb68f3605a553fea1319fe0fcb776c2 *man/pedIBD.Rd
29930fb130a81291035ee2514c40a4eb *man/pedIBDatN.Rd
6b719aff6461bc16f6ccee31ece641e1 *man/pedIBDorM.Rd
de2b78f24df7c05b65e40e90c2edde58 *man/pedInbreeding.Rd
35a8c5948cd28754347dd39c63842a3e *man/pedplot.Rd
0cdfba2e5f41e314949c7e618d806bdf *man/plot.HaploFreq.Rd
c7ae129b5391625a860351b6077231fd *man/prePed.Rd
db4492c7b5192bb1e6e2606391774d64 *man/read.indiv.Rd
fd6fb3218028f4aa5b2ef832a31c659c *man/sampleIndiv.Rd
e2ec414d89d4bf4c0f4f343f0b18d773 *man/segBreedComp.Rd
ccd18cc5002a8a6b67a632b350fcaf13 *man/segIBD.Rd
cc82c6fbcdc0bc08ea79aff914d61305 *man/segIBDandN.Rd
5bdc4d29b9a3a1a7be31a2caa0854dd1 *man/segIBDatN.Rd
8c8453e491606f12809b7afc1ecf5ec4 *man/segInbreeding.Rd
d035569fc3607bc9c1d3dd56c8c774d6 *man/segN.Rd
e1be277cd2b54539a442284b4b2e1654 *man/sim2dis.Rd
7b9d7fe3d5502a7f0b6aeb4217f3fefe *man/subPed.Rd
7552b9f3f4d4a2eae2f52ae8dd1a7314 *man/summary.Pedig.Rd
c87fc0d277ba483e51b13c956b3ba792 *man/summary.candes.Rd
a1e86627020c43852446a8e2c2141b3f *src/Makevars
475fd303742b2a0244e572ebb3fdaeba *src/Makevars.win
41697e6c6d12d4d432c812f822becb87 *src/RcppExports.cpp
86ae53ee0932d63b6c01f0623e05f189 *src/rcpp_completeness.cpp
6e859b6b5fe18306770077c7af762b7a *src/rcpp_genecont.cpp
7a88d7811c63dd2f314a609d35e5f4ac *src/rcpp_haplofreq.cpp
10a26a4a84b3ff18999edfb656264795 *src/rcpp_makeA.cpp
1e895e36e0f72e44286941c23a036b80 *src/rcpp_makeA_lowMem.cpp
fc35055952882daa9c35875dcd953cfc *src/rcpp_nativecont.cpp
61184c6e8e8ac936bb2eb8d4ec858224 *src/rcpp_segBreedComp.cpp
d37e857555631decb106d47da4ad980e *src/rcpp_segIBD.cpp
8f1165bbb8f2243d421c30cadcf6ec1e *src/rcpp_segIBDandN.cpp
40e59841f7758c21bfed5841fda0610d *src/rcpp_segIBDandNVersion2.cpp
7fc6f2cbf1a94c257567d2636f4838ab *src/rcpp_segInbreeding.cpp
3e44336a967f3f4c5351568bfe94d931 *src/rcpp_segN.cpp
03fc934aee18757a8bff602bb4bec201 *vignettes/HaplotypeEval/freq.Angler.Chr1.in.others.txt
21e84f70bac057ee28eb8b5cbf219705 *vignettes/HaplotypeEval/freq.Angler.Chr2.in.others.txt
5a6c57c46b2c53f4ac692b4f8934b273 *vignettes/HaplotypeEval/match.Angler.Chr1.in.others.txt
832fa1aa53d7172558e4aad81fb948b2 *vignettes/HaplotypeEval/match.Angler.Chr2.in.others.txt
16fae7ed8269a18c689b4ef635a9ec9d *vignettes/ocs-vignette.Rmd
2b756a03917a0539469f556a1adba187 *vignettes/ped-vignette.Rmd
b15e67df11855355faff29b7ad31d299 *vignettes/references.bib
d12c362bed4bc28cf69b63f5f4d58522 *vignettes/seg-vignette.Rmd
