dd80bfadf536c3ada2fcb6b9d66de4f9 *DESCRIPTION
9e0cdcd49eaec69e2b563aeb510ea7b3 *NAMESPACE
8393f3003b40a85875c8b4dd7474244d *R/RcppExports.R
f6c29a62da59c897fc49337e676b5684 *R/completeness.R
0e823e5814ff033fb8b5844f3b4cbdbb *R/conttac.R
e936a3e1a826d53f0ce468635b0e3736 *R/freqlist.R
0c9f5f7290059e0281848432dbc5db05 *R/genecont.R
5ee7f764084356953b5fc3c577f42ab2 *R/genecontALT.R
e9d7b063526281d182dbdba9e139091c *R/getNe.R
3a44a59f6c311f6297ff0ebb2fcd702e *R/getcskip.R
606a863f464bb3129ec39b7c95518f97 *R/getskip.R
3c2104247b393c77062d5ff6b633bd37 *R/haplofreq.R
adcf6116f1b140c7f7b840ea5fee2df1 *R/help.opticont.R
5b0dda3f315a0f920930dd32f6caef0d *R/help.opticont4mb.R
e48c7582d741eec28047ecc90b0db906 *R/kinlist.R
6010e8140b5f975a6ab75f086a149348 *R/kinwac.R
337833fa16126bd9cc4a121a14d8a009 *R/makeA.R
09f0684aef18d837d139e06079efba08 *R/noffspring.R
fa5e5c6a4edf95ace6ea3e021329217d *R/onAttach.R
d2c8bc8838a98a99210658c34ac358c3 *R/opticomp.R
2f2b3f7775ca0bc10fbd6ecfd5a05823 *R/opticont.R
96bec8607e6793165c623c9441ca04e0 *R/opticont4mb.R
9cbd07a914c9319d1c9f5208a68775cb *R/opticontx.R
072330784c15c1b4253350bb63ff9176 *R/pedBreedComp.R
e2276c02fb255f3d6b74351cc97fc07a *R/pedIBD.R
a76ec9091980a38b8a83ca50ad63efc7 *R/pedIBDatN.R
0acf0fecf7ad185a667a609a2805eb92 *R/pedIBDorM.R
9abe4b78368eca0dcca449896e69f4df *R/pedInbreeding.R
790fc283de6b76f0ef7285bc020fb641 *R/pedplot.R
c70707a36e808fa5a12877ce2565a0e9 *R/plot.HaploFreq.R
991c112d42f2751ae67317f8149ad2f5 *R/prePed.R
b0215d6cf961d8cab45e42f758c91e1b *R/read.indiv.R
ed85bef891507cda5bd6fb29fce91b7b *R/segBreedComp.R
3d4a00487e90b7f1d0a062abcaf8d891 *R/segIBD.R
a6b3ce04639e5ba9973ba94f086152c2 *R/segIBDandN.R
e80a6e00f96103dfe9b61ccc8b1c441c *R/segIBDatN.R
ba567f7e8d8ea2d9f30f14026dac4216 *R/segInbreeding.R
5e8561ceddd77f4868e31e52c45d53ef *R/segN.R
c4a2a1d4f14ac74d774411bb6062cb69 *R/sim2dis.R
0ff7879d5b347cadf44e7358f3d6b630 *R/subPed.R
5ae28ef66444a069538076b31c31250c *R/summary.Pedig.R
1aa3cab22335a5b40ab37394a1cd9ed2 *R/summary.kinMatrices.R
e76de1848aaea5a5dbd3c0fd3a0bb712 *R/summary.opticont.R
929af34f837867faa18c7890d370e9e9 *build/partial.rdb
4dfc6f75c0559ebee4624e63999702eb *build/vignette.rds
c5ec735fc0148611a8e6c3a9945b37b7 *data/Cattle.rda
9ab775a1bfeddd429ce93e1ddb56ee0f *data/ExamplePed.rda
5fe9bd369c0bf382f62da1ebaa98d098 *data/Kin.rda
616d8f78d06f808f22a8fe89f34b1c55 *data/PedigWithErrors.rda
f8c601a6550e0bb37cae9581909cf025 *data/Phen.rda
89c252ff7069291c443cf0a80b129bcb *data/map.rda
bdaf2bf7680c3f541b4aa80207419b58 *inst/doc/ocs-vignette.R
bb3a4b4d505320b6d62a58f01c3f041c *inst/doc/ocs-vignette.Rmd
612c454cb33565b46260868f696fe19b *inst/doc/ocs-vignette.html
13dbae5d540a1d2bfe9f2d395ef44108 *inst/doc/ped-vignette.R
702dcb8ed5467fbff02ef638bb8df1f8 *inst/doc/ped-vignette.Rmd
221a932b77e44b3339efe1f3c56f9318 *inst/doc/ped-vignette.html
1210d108689489581232c7b346fa84b7 *inst/doc/seg-vignette.R
1595a2064b9538c53435637b4d584b53 *inst/doc/seg-vignette.Rmd
83165921b24e687bbc7aeddf12b0446e *inst/doc/seg-vignette.html
0ea6e449f7675894e6252d4744ac9ec6 *inst/extdata/Chr1.phased
622c8d50e200a74f538f1cc3a25f610c *inst/extdata/Chr2.phased
e28d8962b9fbe9c60d1a8d997253682a *man/Cattle.Rd
c16062ca4c6d3206c4c3567aca546baa *man/Chr1.phased.Rd
ac7d45f2605d40401d4d60bb39e4c27e *man/Chr2.phased.Rd
23f7c0196fa43992cd08fc3f3f394261 *man/ExamplePed.Rd
0e81cda49c52d1e8cfe7de672fd752aa *man/Kin.Rd
c0df346a65ad3cf64dc213e4ceb6ab35 *man/PedigWithErrors.Rd
78a32e19900880cad0594fcf5efeb07b *man/Phen.Rd
8c1a7023bf911395f59dd5f807e52a7f *man/completeness.Rd
bb9b51b31aeccdc15731c9a1c2d91b70 *man/conttac.Rd
810f7966fee139d5332c9e7a46d7af8a *man/freqlist.Rd
cf81d9c7e18e0305a52103a343da58cb *man/genecont.Rd
eaff004689ee6f73f44d34b5a5181f13 *man/haplofreq.Rd
dd1f5a87789bdb67fda6470f5d229a77 *man/help.opticont.Rd
14842b0711f64080b473f86131adf849 *man/help.opticont4mb.Rd
135a6197ef812675275738eada5b126e *man/kinlist.Rd
0c580d9440b721c5b15cc2fdeefb80d0 *man/kinwac.Rd
6253bbe51856760e34237799b98f1068 *man/makeA.Rd
8393928231c613a901717b1cb88080d4 *man/map.Rd
2185b92b77ae5afd317071319b72b5db *man/noffspring.Rd
7d90074a6143b7d81d133f427e68f137 *man/optiSel-package.Rd
761b2ae0d3702310e763a596eab32d9a *man/opticomp.Rd
0e725e964e648d0e4b886b45e4910100 *man/opticont.Rd
222b1f77533f579ff6d9b54e5c23e9b7 *man/opticont4mb.Rd
11ae313392a979d8d2458759a06bb972 *man/pedBreedComp.Rd
610a0b8f54483b1bc888821b7228e7c7 *man/pedIBD.Rd
77ebdfa99444a2dea00e16001e1a38f2 *man/pedIBDatN.Rd
f8f21b62a2e391cc06a30fb58bfc0d59 *man/pedIBDorM.Rd
51c846e6133f6a958bda0183931a907c *man/pedInbreeding.Rd
ffcaa394388ebe87fe4542fa4d60da52 *man/pedplot.Rd
2b1d73ab543b3d29ab47af6c263ed9ef *man/plot.HaploFreq.Rd
c8a6074fd8c97beff7c71617345ad365 *man/prePed.Rd
db4492c7b5192bb1e6e2606391774d64 *man/read.indiv.Rd
6adb2b5e7cf624fe77e5dc0e0c4b8ca1 *man/segBreedComp.Rd
a04312b5cb07ede7a0aa0eebc2c7898a *man/segIBD.Rd
e5d9bab774aa596d5eee2a1bd41badfc *man/segIBDandN.Rd
36c04fe27f9d923ad15b18146b9cb8e3 *man/segIBDatN.Rd
ad5067d43c7e166ca16ba19f553aebcb *man/segInbreeding.Rd
83e109c65fb8be34e85748b42b5d5377 *man/segN.Rd
a22d02a7c772af4c59cf9081a8d37386 *man/sim2dis.Rd
78a929196b25857841ee839ae3cd49bc *man/subPed.Rd
7552b9f3f4d4a2eae2f52ae8dd1a7314 *man/summary.Pedig.Rd
04597ca0f4b21232db73e9dc7b1022fa *man/summary.kinMatrices.Rd
7858e0e5cb07f7e5dbcc90adc89f703c *man/summary.opticont.Rd
a1e86627020c43852446a8e2c2141b3f *src/Makevars
027279118ece0dbdfc3646fbd05078ed *src/Makevars.win
cf1307bdf1600d70c7de05c297296a58 *src/RcppExports.cpp
9f5642926f46bb6aa82ead01f7023f32 *src/init.c
f994eef6502fc8670cdf0d7107ec8555 *src/rcpp_completeness.cpp
ca395822981e42788c9a986cbbd36b57 *src/rcpp_genecont.cpp
61cd0c7ae103ea3bf95f464bff4aef3e *src/rcpp_haplofreq.cpp
10a26a4a84b3ff18999edfb656264795 *src/rcpp_makeA.cpp
1e895e36e0f72e44286941c23a036b80 *src/rcpp_makeA_lowMem.cpp
49b4783986a89ba8093862ccc742e025 *src/rcpp_nativecont.cpp
d4916c6acbeda0e391d7cc830a217322 *src/rcpp_segBreedComp.cpp
5e3a52d693fa7246cea933dc78f48841 *src/rcpp_segIBD.cpp
a148f50c8302ce0a95d548f74bcf31d7 *src/rcpp_segIBDandN.cpp
59ba5e8b2c002f529d06d9e2961ef8f6 *src/rcpp_segIBDandNVersion2.cpp
7fc6f2cbf1a94c257567d2636f4838ab *src/rcpp_segInbreeding.cpp
7fbb6e37a3534ece7dbf8556ce1f36d6 *src/rcpp_segN.cpp
03fc934aee18757a8bff602bb4bec201 *vignettes/HaplotypeEval/freq.Angler.Chr1.in.others.txt
21e84f70bac057ee28eb8b5cbf219705 *vignettes/HaplotypeEval/freq.Angler.Chr2.in.others.txt
5a6c57c46b2c53f4ac692b4f8934b273 *vignettes/HaplotypeEval/match.Angler.Chr1.in.others.txt
832fa1aa53d7172558e4aad81fb948b2 *vignettes/HaplotypeEval/match.Angler.Chr2.in.others.txt
bb3a4b4d505320b6d62a58f01c3f041c *vignettes/ocs-vignette.Rmd
702dcb8ed5467fbff02ef638bb8df1f8 *vignettes/ped-vignette.Rmd
b15e67df11855355faff29b7ad31d299 *vignettes/references.bib
1595a2064b9538c53435637b4d584b53 *vignettes/seg-vignette.Rmd
