913a1252ea3cfa75c9d77b64e1e616fd *DESCRIPTION
e804d4682e3d93b5d53ea8b234eb0860 *NAMESPACE
28288a6df1a1bc102df56f3a6a00545c *NEWS.md
6e52dd16834e75780c3ec6af33ad19c2 *R/dual-continuous.R
3f9813feb989f156bbc9952f90e46e79 *R/dual-discrete.R
e3c12b5fa7f8f9012b0d885fc01f00a8 *R/dual-none.R
af722f1e574f90291df3e6b4f8008156 *R/nosoiSim.R
4dd7498b6269f56fb947eb8735b2f2cb *R/nosoi_sanityChecks-Messages.R
5eb1b5e99997caf4b2c2492553be5ccd *R/nosoi_step1-makeMoves.R
66d815b9c6530674986b3d4576119d95 *R/nosoi_step2-MeetTransmit.R
9b916c1ad18127dd465be46115a03cb4 *R/nosoi_tablesManagment.R
3e746b34303a406b5fdab3e51a9889dd *R/nosoi_utilityFunctions.R
0fde2ab2bef44d9110a59dc59674fd88 *R/output_nosoiSummary.R
605d1af3a14c3dec3ac49597c63fe79c *R/output_treeGenerator.r
cebace50b2ddeadf5602582a05b899ed *R/output_utilityFunctions.R
9fdd3fc7905837e62febf78371a8f751 *R/single-continuous.R
2293aa58da2e2531f0eae7e10f1e9747 *R/single-discrete.R
b50d5f74d63c56210d6701e3385fef8e *R/single-none.R
c1a8bb9234b35b122804a5ba71a7d321 *README.md
efd5547da2cc163d1388112617a58572 *build/vignette.rds
f650495bbf50b1e438c5f37efbe26bff *inst/WORDLIST
bf39b33644738baed72310e1fa8f2388 *inst/doc/continuous.R
68ebeba93b9578d400af16f13dddd5b3 *inst/doc/continuous.Rmd
372c69e2e26d4d03f1dd6d3ad305422c *inst/doc/continuous.html
012f0ad17e000beea8b6b740412a6818 *inst/doc/discrete.R
5e2514d563e2eee9cb26a2ed8343e728 *inst/doc/discrete.Rmd
dbfcf634a525351f8aad040a29b126d1 *inst/doc/discrete.html
69742b1e595e9fb44a372c76b0b60c96 *inst/doc/none.R
48fca7857f72f24c193dd332c820888c *inst/doc/none.Rmd
0225460f3d5b2a5ba4f0d4d101ecc0b0 *inst/doc/none.html
1aec8771bffb7f922ebd0d4f12571c9b *inst/doc/nosoi.R
afc52d67a00997f06fa44ea7ca553e19 *inst/doc/nosoi.Rmd
e5e6261ff029823a8b89bc98431a8201 *inst/doc/nosoi.html
825893897edbe8787cbe010b71253a66 *inst/doc/output.R
7aaee75ec8cd86bd69d943e35d18d86a *inst/doc/output.Rmd
0f09b87f8021332cd92e57ff7fb70b86 *inst/doc/output.html
9bc68b7bf08d58280418ee9aec7da682 *man/CoreSanityChecks.Rd
3ed631fc64fbd60e26edcc8edf71d1a2 *man/FunctionSanityChecks.Rd
a02367fa1a7c01efab7f6387f6642269 *man/MatrixSanityChecks.Rd
93a410169b9d2eb9d713ccb69c9a51cb *man/RasterSanityChecks.Rd
132aaf71301c0fa1a3e1d11d2b33e4a1 *man/add_node_tip.Rd
64642cc183ff9f6350c2b89f0b5e87a3 *man/applyFunctionToHosts.Rd
55c6b92bbfd7d03200d55e8e1b85036d *man/cumulativeInfected.Rd
cbfc06e85366ea80bd4a2ed5889b1722 *man/drawBernouilli.Rd
fa51166aa8e69bc6ba853d03f8d46993 *man/dualContinuous.Rd
37a9e2343275e98b3acdefd8599edd9d *man/dualDiscrete.Rd
8e84f3ec6b48a53933b1e8272db7777d *man/dualNone.Rd
350266a559a8e24b3496e4db0d71252b *man/endMessage.Rd
f71fba2a242bb6d4bda8b1d615287e19 *man/figures/logo.png
9849de1a926dcd67dde072876b50769c *man/getCumulative.Rd
eab33e941310c19a9cf9161391442687 *man/getDynamic.Rd
6f88f9bd6f7139810ac21003d141c9bc *man/getExitingMoving.Rd
61622743e8139df7c7f68b25366fb960 *man/getHostData.Rd
558292c601a48c5cf7978658a2b2ff9a *man/getPositionInfected.Rd
585efa25b6f59279d0957a3f80067a0b *man/getR0.Rd
07f2f4502ac0b569a5d46de193da770c *man/getTableHosts.Rd
93adf66d2fb037916bfa83c05421b65c *man/getTableState.Rd
d113624a8ace7b61fb711dc871ef6b42 *man/getTransmissionTree.Rd
bea5931e744df539cd0c24707e81014b *man/get_node.Rd
ad06582545718a89b90213fc519a13f1 *man/get_other_count.Rd
e2a5712ae881865f076be0f75314971a *man/get_position.Rd
387546049da2a78ee1848e546fd94e17 *man/get_state.Rd
c81733bd69c87258bf6d88d5d994adb8 *man/iniTable.Rd
3329b162140b94ee07d37fceb84f1431 *man/iniTableState.Rd
99b1e3710ac318d54f23086be854ede2 *man/keep.tip.treedata.Rd
171e24ae2b098cf9d7cc60bff43e9e1a *man/keepState.Rd
4684b8df7ad6455e03157f369bf05937 *man/makeMoves.Rd
b78f38a13cb76eb36d83f43aa40cfa6c *man/meetTransmit.Rd
1cf99374f0e207d90e2d4bda45173e77 *man/merge_host_tables.Rd
8c692c148e7227d1987ebebd1efcbfa5 *man/moveFunction.continuous.Rd
f5972baaad9405f630b188a348db2430 *man/moveFunction.discrete.Rd
be093e592342092c8b298d6de27ed305 *man/moveRotateContinuous.Rd
78a7cf5bee8ce99d8fbb33ec51d2d480 *man/newLine.Rd
01a6bf8f5945832be37bb6ac127a6b13 *man/newLineState.Rd
1b3ee14545551aa19d8f3939911573b5 *man/nosoiSim.Rd
e9ba18c17fa0425c732a30eab090e11a *man/nosoiSimConstructor.Rd
704500ea574d26ae35b9b7619a974180 *man/nosoiSimOneConstructor.Rd
020f958ed6aef6a888ce251a6c0da09f *man/nosoiSummary.Rd
b8c784c4241274889d83f69575ce2511 *man/numberInfected.Rd
30d93b9e226280e7645670ba68e290f8 *man/numberInfectedBGW.Rd
74de03f676c227f273d1a840fe068e3c *man/paramConstructor.Rd
8f114047e3683ecc662c608730ffdabb *man/parseFunction.Rd
dea2c6d70ae25add2b18b3303a5a43ab *man/progressMessage.Rd
d6df472f9ed25672b724b20fc825fbdb *man/sampleTransmissionTree.Rd
4f9f1366c46c463ab75a8dda4ebd668b *man/sampleTransmissionTreeFromExiting.Rd
87f94f913c8c9662292eb27e84bb6287 *man/singleContinuous.Rd
f3529fd9c4fad91261e79b536aff7b80 *man/singleDiscrete.Rd
ba4da3ea962120db286fe62e050f0585 *man/singleNone.Rd
2fd03c7de81bf4273509232a44e5a74c *man/updateHostCount.Rd
52e4da52f56a6a8741c7ecbdae70af63 *man/updateTableState.Rd
8a36f5131e15de84283c09b81a9ebddf *man/writeInfected.Rd
04db6b164b8415bef3076435b9acbf89 *tests/testthat.R
1781cf6920f28963b9a5bfb76f1204fe *tests/testthat/testDualContinuous.R
ebabf13acf069525ade23af465483cc0 *tests/testthat/testDualDiscrete.R
3b421f9b405297e95b0a9b7b096fa013 *tests/testthat/testDualNone.R
5936c97bc0a08ca710fe56bcbd0c702e *tests/testthat/testErrors.R
934d19e33656b6380d2b0ce7b3998389 *tests/testthat/testParsing.R
c8fb69a7221cc2be4ca6d9f5e7e71e27 *tests/testthat/testSingleContinuous.R
c3b724cfef9ec6bc714197259971dc5d *tests/testthat/testSingleDiscrete.R
ce99e9d109c70f4492154419a781a8ca *tests/testthat/testSingleNone.R
0479602a6c9c66d9528b5f51aa2e484d *tests/testthat/testTransmissionTree.R
68ebeba93b9578d400af16f13dddd5b3 *vignettes/continuous.Rmd
5e2514d563e2eee9cb26a2ed8343e728 *vignettes/discrete.Rmd
48fca7857f72f24c193dd332c820888c *vignettes/none.Rmd
afc52d67a00997f06fa44ea7ca553e19 *vignettes/nosoi.Rmd
7aaee75ec8cd86bd69d943e35d18d86a *vignettes/output.Rmd
