00f25a3c838364dbb637c7186588ec2f *DESCRIPTION
3c173678288977020f3b33c2a4586668 *NAMESPACE
52f69474e19aac9b3299d221ad738bfa *NEWS.md
0d6299758955c55654bd8d84f89a5701 *R/RcppExports.R
17e5a4c1fbbddb88a3e0b0b0ed773fdb *R/addCwres.R
408f44d7fcb8295b707991cbeca7ba9d *R/asFunction.R
a60634c7cb089667c0574645484f448a *R/assert.R
f08620ebfd2e6c7b0c01b9f04575f722 *R/augPred.R
f936e998c86f85d89da5296fd74a75ba *R/bobyqa.R
bb9b1abce3a520f8a6528e987064e849 *R/broom.R
271668d394a28b1b4d31bfb4f2d69661 *R/cloneNlmixr.R
341b2af2735e9aec1b6727cb10a8efb5 *R/coerce.R
5a25401e7dc59cd8068325ddd6461453 *R/complete.R
27bba1cce90640a774dcf69375f06c4a *R/cov.R
7e93518abdb7008c1fd31c8be5f7eb77 *R/fitSim.R
e92b7ad1c6f0e8f4c81f75db82c0ccd2 *R/focei.R
49f77de5c6f712f742a56b567192c30f *R/foceiControl.R
837da2fb45e9181ae29fd53ac0ea3f1e *R/ini.R
44807a79797ecfd156fcab139c980d3a *R/lbfgsb3c.R
a5fbeb3d563e51b2091a9318831a47d9 *R/md5.R
9ee71efbe3c94fb0ebb123118b094fb0 *R/model.R
810211ebe34dcf91f15415205481c71c *R/mu2.R
56eff89a68b3933427469db55572172e *R/n1qn1.R
6aa1c1ac62282080edf5650e5d0c1fdf *R/newuoa.R
b83c0b2fd87ef2499dcff0b86258d5e7 *R/nlm.R
497b55eaf332335480035b0e8b28849a *R/nlmShared.R
3ec0ce47f70946da3a60a49824ebbf41 *R/nlme.R
576b076c7f98ebb8ddd25bd88bc3c3f6 *R/nlmeRxUiGet.R
5d1dd9deb9cd34a29e00b694a58f705e *R/nlminb.R
8054940a1548b52585fbb8686ddd8a10 *R/nlmixr2.R
1b0aac6842906548afd1dfbe1a737c09 *R/nlmixr2Est.R
ee60851f641d47afa14e8c7e33595d91 *R/nlmixr2Keywords.R
295739dab124932e3f614bb5ab1eb064 *R/nlmixr2_md5.R
aa349170ac91b67d8bf41e7ea07d6f6b *R/nlmixr2output.R
dbe313dbb46970545c033ef9840507ab *R/nlmixrAddObjectiveFunction.R
fa788b94f74bb87ae7b8f2a774265513 *R/nlmixrCbind.R
8c4c1af310a4e60623875f530432570f *R/nlmixrGrad.R
e77a7c472210b99563da7237d8559995 *R/nlmixrUpdateObject.R
b11ffb03c0718e45793b5294ededa2ea *R/nls.R
dfac1a6b095c9a8f2b13745c8008b5e4 *R/nmObjGet.R
3f408662b0efeb5d1b530fe3e951893c *R/nmObjHandle.R
f8f5995d8ceb1af2e188143f65cd8fd0 *R/npde.R
15fe08e103a5f663dfd030fdaff6cfe3 *R/ofv.R
5cc9acb01c93598d5faa9f3cbd971938 *R/onLoad.R
305a63f0da74120048a156639a867816 *R/optim.R
b334f1ed2472ee77ac0b57b7b68c694b *R/pkpars.R
1a0dba704ae04f5f5278f935adae2bd6 *R/preProcessModel.R
3e4fe856d746e39c09da0d71f0457475 *R/print.R
d2bb3007203d8c25938ce37acf3003ab *R/reexports.R
f831ddb931b25757091a9c659db2d98b *R/resid.R
37eae5b511f772a6f8c0e7c2cd188c69 *R/rxPipeline.R
df367e9de3c9b628919e60248b0764c6 *R/rxsolve.R
e7887e583f53f4099dc75a71b4b63ca5 *R/saem.R
6428b9b3bda23caca358a5aff870bf86 *R/saemControl.R
3f4858fdf9a342333408df3c52bfc519 *R/saemRxUiGet.R
ef67f325482a07a8feb899f59893b11d *R/saemRxUiGetModel.R
f012e2c7d2ddf7e1fc5ffbf86bfd3bc2 *R/saem_fit.R
34c189811f0cb48fbc541a71e3e417ed *R/saem_fit_aux.R
4085a7897d1d573344fa50e674654284 *R/sharedControl.R
58073d323870ca66e8db65820b8540e6 *R/simulate.R
048e7ad5619e57406fc21b0ae883a43e *R/sourceCppFunction.R
0afaa6e8906679a9edacf56443e88c85 *R/splitModelRxUiGet.R
06a73939717887037e37ee552f6bfcf1 *R/timing.R
9c5b0d8cbd4886e9e8bb47b2bbe7bfa0 *R/uobyqa.R
7bbb7a74b65a930679bcb87cfeb9fdc8 *R/update.R
aac2b56784abe1a82151009dcb6ebe56 *R/utils.R
a40fb13e15a1cd1ebadd54d7f799ab49 *R/validate.R
840d3ecaeb9649aca9de1584f15efb3f *R/vpc.R
bb4e70a4a03b24aada233a1e0c54a127 *cleanup
ff299041ccb028c5fd0269c872af28fb *cleanup.win
17edfc56c452002cef7145a150e5428c *configure
5be627af38dcb866b15b805abb2e5407 *configure.win
37dfbb464d43fe1ad1269633c9433106 *data/nlmixr2Keywords.rda
4c6d76290d5fe5582626f3a3f1c857cc *inst/CITATION
465c1b43c3b1b3d9afd682f4b312ffe1 *inst/COPYRIGHT
e04288e8b7483894c6fc1fd8a3456778 *inst/THANKS
bef7777ebc1b2a07f6979c22698465b7 *inst/TODOs.txt
b27a45ed61277ec516ea5c6379473e6f *inst/WORDLIST
fd92fdf14fea9ead026dfddb367652d9 *inst/include/generic_ode_interface_template.txt
45efe29b7540dbccb20df7c71aecda0f *inst/include/generic_ode_interface_template_cov.txt
2d49a4b535d41d7105ee5e405d8d6cab *inst/include/lin_cmt.hpp
90d01b4133cac5ff3ff2c544e837abb3 *inst/include/nlmixr2est.h
0fa48f78ec7fbcb8e64fd9f3f92943ce *inst/include/nlmixr2est_RcppExports.h
d478cf993fc714b9b046101c6cf23e08 *inst/include/nlmixr2est_types.h
934aa1a71b262a7c3d0ae23d47913974 *inst/quadrule.diff
125626dc74cad609fb34e26818355d31 *inst/revision.txt
b9e6171d8a6d57611b035056d7d36514 *inst/tools/workaround.R
7f2b209022c81659e5ed706e98f32e85 *man/addCwres.Rd
463b4496c3eda3a579538db0044a5204 *man/addNpde.Rd
931893cfb1355fa43eb54658f9282c75 *man/addTable.Rd
8d08704a3688f453bf1ee806865030c6 *man/assertNlmixrFit.Rd
10b9b98d1d6048d4ab5b5e89989e9c94 *man/assertNlmixrFitData.Rd
161cf5ae8dc7097105a2229b034235ac *man/bobyqaControl.Rd
7601967d65d74bde2c9248d55855a095 *man/boxCox.Rd
279b7f77e5c7fb94f53b35afd739f00f *man/cholSE.Rd
39928dbd4b1be48e764026c0ebb7fef8 *man/dot-foceiPreProcessData.Rd
1175dfea059b4c8db9534c5f2a2cf109 *man/dot-nlmFinalizeList.Rd
7bee06c2a6627bb04f40f2d63a035648 *man/dot-nlmFreeEnv.Rd
2c9516aecf9e7df4753b86b2d4aa1a0a *man/dot-nlmSetupEnv.Rd
56296ee7f5401a75d79031d7af4590a3 *man/dot-nlmixr2estLastPredSimulationInfo.Rd
e44451773b3a0f9591ea76346816ab16 *man/dot-nlmixr2objectNameAssign.Rd
5638aea9c5f3649a6e3bba09da3a99ab *man/dot-nlmixrNlmFunC.Rd
c2a869b102f896dcc021e857ca9b1ec6 *man/dot-nlmixrNlmeFun.Rd
6909ec344c061136897f6a2ac047bcd2 *man/dot-nlmixrNlminbFunC.Rd
93c4cf66aca9f9ff32437e9feac83edc *man/dot-nlmixrNlsData.Rd
aa8c315947f36e7818357c50ff2e130a *man/dot-nlmixrNlsFun.Rd
fd20c6810e6d442ca46c7e1c2b196c85 *man/dot-nlmixrNlsFunVal.Rd
b71652b6191d599f5f7658cb61ff6183 *man/dot-nlmixrOptimFunC.Rd
80d25ae9192a0a3ba850f698a2ad6818 *man/dot-rxGetDVFTransform.Rd
07f93e66ed200cb010b9fccca38fd585 *man/dot-saemDropMuRefFromModel.Rd
517d3825f365f08fffb98080c273ee82 *man/dot-uiApplyMu2.Rd
cbcf0fe0efcf360e8bcc8aefdc0bf371 *man/dot-uiFinalizeMu2.Rd
6330842d6c50beae6d762330793b85b1 *man/figures/README-example-1.png
372d3a684aa31c89a3b94b839d00c82e *man/foceiControl.Rd
6fac541bfc22903d5e0505d9f66229e1 *man/foceiFitCpp_.Rd
2e3a15f75e8fb16f2ffebb2523f43ef9 *man/getBaseSimModelFit.Rd
831439107042984182980e78b266db4a *man/getValidNlmixrControl.Rd
dec911445fbbe0b4006d831b6fe68434 *man/lbfgsb3cControl.Rd
475d0c1fa56440c8223c479bbfd5f6d2 *man/n1qn1Control.Rd
08c64d431d51d48f6574344f499b6f0b *man/newuoaControl.Rd
8138779d0fd1897371a8ec287ffb2562 *man/nlmControl.Rd
0de48edc7daaa7760242e6bd5a315b5c *man/nlminbControl.Rd
9408caaa9e4ba782e673e93584e749f2 *man/nlmixr2.Rd
37eb60ad7c1e46147b945b7b184269d1 *man/nlmixr2AllEst.Rd
f16840c267a030f2dcd3440ada45d4a5 *man/nlmixr2AugPredSolve.Rd
1cb26a53a06007cd1590f2c017d4f5f7 *man/nlmixr2CreateOutputFromUi.Rd
205cb82bf9c3b28e67a87a1db2eaa050 *man/nlmixr2Est.Rd
6c1cc3d8738f9526baf33d991f2e780f *man/nlmixr2Gill83.Rd
4958ff2e594a7926a057542287800dff *man/nlmixr2GradFun.Rd
9e870a951a0149cc6069b4773d8f08cb *man/nlmixr2Hess.Rd
28d26bef03480fd568cfc0043b60e04a *man/nlmixr2Keywords.Rd
f74ef056daddbde7a0fbec0b57c86584 *man/nlmixr2Logo.Rd
e014a54c6098acf8df2d2e47f1929b61 *man/nlmixr2NlmeControl.Rd
0c95148b2eee3ac88eccf790da86864c *man/nlmixr2Print.Rd
1141c31b86df0d6aad80bc70a4a3b025 *man/nlmixr2Validate.Rd
36aab796e89e9ae0ba53cf89035e5447 *man/nlmixr2Version.Rd
b50a3944bbe13b84ef6918e32024b068 *man/nlmixrAddObjectiveFunctionDataFrame.Rd
e44ec6165f0c299b7d2d9583eef76603 *man/nlmixrAddTiming.Rd
2c82ff0a1b168a00e4b2fde5882201eb *man/nlmixrCbind.Rd
5137e888e86dafb7e5ea2164f83807cf *man/nlmixrClone.Rd
b21fd250ddc962a496dbc253ce5428ad *man/nlmixrUpdateObject.Rd
654d4ed6b9ba3d24dc20889d44d4f87a *man/nlmixrWithTiming.Rd
003d858bd1d1d6bc1c9115726a1d9255 *man/nlsControl.Rd
c8b82c1cfc8dd8921776ac859fe60d87 *man/nmGetDistributionSaemLines.Rd
7b7b4e63ecedf2c8a6c26074e40ffdda *man/nmNearPD.Rd
b15c18cb38aaddc50f2f23bc98326c0c *man/nmObjGet.Rd
e9bf3b9b644b66929cfb6e4cad824bf5 *man/nmObjGetControl.Rd
6a4f4c65cf7a736b79973282c66ba97b *man/nmObjGetData.Rd
8b15aa33bfd2bd9dadf25ea47a03d116 *man/nmObjGetEstimationModel.Rd
5b14aa0c228e57eed20210b9ab635831 *man/nmObjGetFoceiControl.Rd
63470939e945b1cdc96ff8d79b26d114 *man/nmObjGetIpredModel.Rd
91c14a4870fdf6d03c9393819216b439 *man/nmObjGetPredOnly.Rd
0fdc2284e8162b252078bd78e8038e6c *man/nmObjGetRxSolve.Rd
ce6a918a3cc1ff44ba172f55f5820c31 *man/nmObjHandleControlObject.Rd
fbaad1e5fbc94895b2b2b550d9aa892e *man/nmObjHandleModelObject.Rd
50cb46b6c07ed9ec0a5d553eca98a48e *man/nmObjUiSetCompressed.Rd
da7b20a26f309839649e3727dcbf8d8b *man/nmSuppressMsg.Rd
92b0347e801e748fb1ec834eb344cdd4 *man/nmsimplex.Rd
966c8105dd188da0222d60b985e891ea *man/ofv.Rd
9bff50bc47e65b4b98cb55aa52780bcb *man/optimControl.Rd
825b53dee450c01286f2f694712b5e4f *man/print.saemFit.Rd
e6e8a42362e27e0c2afd7dfbde5fd6b7 *man/reexports.Rd
afbc5a253a8f8e6b39a5d988dde0c888 *man/residuals.nlmixr2FitData.Rd
1c7e9ce6080ce200711b6136190951f8 *man/rmdhunks/figure/unnamed-chunk-2-1.png
da82d0aec0fe2374d8bed410ce4151ef *man/rmdhunks/nlmixr2Keywords.Rmd
e2165d1fbd0cdfce4ae2085dba65fe1f *man/rxGetDistributionFoceiLines.Rd
f2c5c9c3513a88c6668436e3bbef1fae *man/rxGetDistributionNlmeLines.Rd
0614d49098a4c7cd7acc6c5f2cab7ae6 *man/rxGetDistributionNlsLines.Rd
b43db91289640132ee3a53c05ae48b29 *man/saemControl.Rd
e009448537d8d1ff521d960bd3b73a36 *man/setCov.Rd
29a7fc3a87e849b8c99d8995a9d02114 *man/setOfv.Rd
e7db610fa0b56d5b3c11d5510a07555d *man/sqrtm.Rd
3808886bd44774601061f8375c6d4bc9 *man/summary.saemFit.Rd
6798a5afa07c7c9d9cd464679a5dcb99 *man/tableControl.Rd
04d9d1cde175584c90b862b88036dbdf *man/uobyqaControl.Rd
fbf7a0063f23bec694f5c5e1d419acba *man/vpcNameDataCmts.Rd
62c2eee95b6bab3f8a4b9074810a9824 *man/vpcSim.Rd
1c96bfc6dc3dba83e88ae3bb155bf245 *man/vpcSimExpand.Rd
9d640f44bb92a19ff91d932b2309f362 *src/Makevars.in
a832581492e84f7bb2b1a1e99809b42d *src/RcppExportMod.cpp
ad04fb3f6c0b76a4dc62245798087975 *src/RcppExports.cpp
238cb7161f187c02c132e72cb66b021a *src/armahead.h
a789961e159e9d3c78ed6ba8d1ff2609 *src/censEst.cpp
7ac43d6a850a42d0e2a4dfb785ea4242 *src/censEst.h
32c245bdd2754c3602773c2efdc45d70 *src/censResid.cpp
79f83305440da5b9ec28aa919cf1a45d *src/censResid.h
d51f2cd4b4252d7154ac1ac5bac4d6be *src/cholse.cpp
0f08491ed2a8f82c3710bf62287f3ef4 *src/cwres.cpp
8249dabb564ed7354aa44349aa4eef65 *src/cwres.h
6076dbdac367f18993aaac0402eb8595 *src/evaluate.h
45ff2d1b96980f2188e07d62250cb9f4 *src/expandNlme.cpp
8e9cfcfdb6e1f3af3588b2e29adfb7bf *src/filterNormalLike.cpp
9b877d193414fada4869d12c72228fcc *src/init.c
c851a5683b44efdb3f53d2614c10b3a6 *src/inner.cpp
748f522c2b1ea4d31e355ef147d80ee7 *src/inner.h
c894a06e57578889e94fd5f75d523e69 *src/ires.cpp
caa81b90b3421c69a08fc1f16a913660 *src/ires.h
5ab66ed62f115d047f5452c053f18fe4 *src/lbfgsR.c
8762e6541cdb4c1d612bd8015d0730f2 *src/merge3.c
9efb398311782f0a8d294321aefe7f7c *src/nearPD.cpp
c5c2e02b192f57235bbd73a03bdb8957 *src/nearPD.h
d0920d475d9f2b8407bfe4bc4a8e7064 *src/neldermead.cpp
de5728616fdf254d8c30fe51c454dcb5 *src/nlm.cpp
b551a26c885e0792e23aa2a21e624dd7 *src/npde.cpp
c03f49fe47145198c6029bcaa84323ed *src/npde.h
45af79b04382649245a01faeefa309b9 *src/res.cpp
c6d28f3d8b7da59913206218a7f57010 *src/res.h
8134958e7a94bfa1c7edbb9eaa5e6d4b *src/resid.cpp
0c226a3c1ce3110319b8f31de3863504 *src/rprintf.c
733c71d23b69eb1d3d9114bd9f2c9ba5 *src/saem.cpp
c324700f5a70e874482de445658273cc *src/scale.h
3e99276e76e1eef4a409f4f599bbe038 *src/shi21.cpp
14cb592dc533cd3d4af6823c1206dad3 *src/shi21.h
3621532b50db78f53d9bd3b169712d98 *src/shrink.cpp
9d6cb6a501626a91593af50af51d6098 *src/shrink.h
800e561097885abc663dc0928fbd442a *src/slice.cpp
8f244500742b2c4b3cd62c3dc05d15fe *src/utilc.c
87d981adfdb4deb52ba3668872015dc2 *src/utilc.h
219ad27eed623e7fbe9bedb4aac280e3 *tests/testthat.R
59eab8b008ad46a8da78c82a7a006695 *tests/testthat/datos_pac.qs
ef8df4e73ea2b198454ab8a5e5aeff1f *tests/testthat/out.focei.prop.qs
b606b5f301391558ae08586e46c7d931 *tests/testthat/test-00-reload-ll.R
5454d1e00d94984ba687a36004f97baa *tests/testthat/test-addCwres.R
fe74ae1dc062d237b90f4d8cf698a9be *tests/testthat/test-augpred.R
00db8ebca6879e95e8032dc6b560c549 *tests/testthat/test-broom.R
a0e602dbd885ea71bbb1664ae76b187d *tests/testthat/test-coerce.R
80fb2d39113d979e8ddced3e29123c8b *tests/testthat/test-control.R
70d42da156b45f2cb2f8fc98c8a1320f *tests/testthat/test-cov-focei.R
099657fe397ef6da2b614ae9017dab3f *tests/testthat/test-cov-mu.R
9d8aa400377ffcf1eb04055ba2326424 *tests/testthat/test-cwres.R
2fb5a687be60b6235cefd4730c1efe23 *tests/testthat/test-fix-cov.R
61e0e7862ef705c729fde60e3faa61eb *tests/testthat/test-fix-eta.R
379ef4049195faac115bda525b0b976a *tests/testthat/test-focei-cens.R
cfb5bb839122e704ad95f4670c18f110 *tests/testthat/test-focei-char.R
9e831a38da88536c9ca8ab7ae0a80d08 *tests/testthat/test-focei-inner.R
e1fee05a11fa7fd42da1d8669255bc14 *tests/testthat/test-focei-llik.R
5a89c5cab0c7136d2534245ae95b1eb1 *tests/testthat/test-focei-preprocess.R
f1bcd4f81923fc30626f6f201b7a6272 *tests/testthat/test-focei-wang2007.R
bc5c941d7eb7229dd6fc83bf87eac2e2 *tests/testthat/test-ini-ui.R
bce6d848d8a86bd6ae7240521bb8a360 *tests/testthat/test-integerish-focei-print.R
f466450b58b9724c2c1cb562ab37a6ee *tests/testthat/test-issue-281.R
1721aa0215b2b57ab36b01e52f9e8f27 *tests/testthat/test-issue-429.R
70aa5a3095de877685939ee9c782baaf *tests/testthat/test-issue-502.R
37492fa33a8cc4b752a95116bb8adbd1 *tests/testthat/test-issue-503.R
5ff8c6528450469f42ecbdadc201bdbc *tests/testthat/test-keep.R
6a96f8b243be6078a353b4af5e331ac2 *tests/testthat/test-lag.R
decbd12eaf86d228e4755ca3a8ad4624 *tests/testthat/test-manual-back-transform.R
a5c5ef141b2ec62fdde248f552e47cc8 *tests/testthat/test-model.R
31c2c60c361c9e044539dab6d3ecc839 *tests/testthat/test-nearPd.R
095e3a0fc36ff26d92301d80b2f54f73 *tests/testthat/test-nlm.R
6f618687d2cb1adfec78b8bb82fb55ca *tests/testthat/test-nlme.R
6f11367c93fb42d02bdb86551da48164 *tests/testthat/test-nlmixr2output.R
3313118890a95c1d02cf717b38602650 *tests/testthat/test-nls.R
66f0e0c48e15665105875e61265b3bcf *tests/testthat/test-nmobj.R
b1d5166dbf43ca6406633566970022fc *tests/testthat/test-nonmu.R
e26fc1144d7054b1f2abe91f3a267c27 *tests/testthat/test-np.R
e6bc8297ff1d3c34a79b2e15e3afb032 *tests/testthat/test-npde.R
256ec7e14d8cc37f825375e13a45460d *tests/testthat/test-optim.R
b7978ab56eb509e43ac4fb997aaa8373 *tests/testthat/test-posthoc.R
e7f8db6c8693e85bdc83c91dd89b1910 *tests/testthat/test-print.R
1502971cbad1f44c979b5da87f2f86dd *tests/testthat/test-restart.R
e4488f6587a275d232bf3edb707e7547 *tests/testthat/test-rx-model-props.R
1f3334a446f058c9b0bac3b36e6722dc *tests/testthat/test-rxsolve.R
5ad37219e2387798a0314c410b4329f6 *tests/testthat/test-saem-aic.R
7fef277c10186888c4e5b0a50d55cb1a *tests/testthat/test-saem-drop.R
c01e2f20eb7fbd94edd0c68787d80541 *tests/testthat/test-saem-funny-mu.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test-saem-regressor.R
068d3a649be237b64d6bdfb077190384 *tests/testthat/test-saem-theo_sd.R
79d6b7ac50fda3359aab2f11190b9741 *tests/testthat/test-saem-theo_sd.qs
c62c2ff788d7eda7de0f812201abe1c0 *tests/testthat/test-saem-translate.R
a123693fe41a9fb9bd7b528e15703cf6 *tests/testthat/test-sens-fd.R
b34409f8823f841faf6ac5eff7f2d11b *tests/testthat/test-simulation.R
b8f5e5d589a09ab398dc8977c56bd768 *tests/testthat/test-split.R
2d0c9d1b2555f63a9bd7361b47a18216 *tests/testthat/test-table-cmt.R
89d3e425f5b4e59d95a601b67e3c31ce *tests/testthat/test-tad-in-models.R
d314c873957ffca8fc35d483f92bd80b *tests/testthat/test-timing.R
a19ac290c617718634d4f8c8b6bcece3 *tests/testthat/test-udf.R
789dc3dddf9cf902b7582a46803d4785 *tests/testthat/test-ui-est-change.R
796c69dfa2af3050bbe3ba6e5617d3ea *tests/testthat/test-unary-mu.R
01811235e40878d64ec7f40222e7a997 *tests/testthat/test-update-estimates.R
c9a298a7273164f5103bcc85ba808cf6 *tests/testthat/test-vpcSim.R
