35c70229bc416ab02c2406c658d5e6fc *DESCRIPTION
09344ffe75fde34964d6a5f717efb780 *NAMESPACE
4d301d64ede5784fc0af9bf1bfbf500a *R/ABC_SMC.R
b8c9266e650d43e793784a1d5eccfb30 *R/get_average_nltt_matrix.R
7a64e2943e5669508d309ebdc13b81ac *R/get_nltt_values.R
083ad2369478d90a5bfd7ce309aed113 *R/get_phylogeny_nltt_matrix.R
4b1b72131226a0d92b5e5321e5c0c7be *R/nLTTDiff.R
91d437fea6ae4294e20bcf047b9aefaf *R/nltts_plot.R
f0d43290a1e1b1d9ad70605918983d92 *R/plot_nLTT.R
ccb494e6604928f35c22b9a0a7f3c761 *R/stretch_nltt_matrix.R
ac3c1d3c7657e7759bd9c63f9ca879aa *README.md
32571e0e8167d0abc0442dd92acb5fcd *build/vignette.rds
a682e93715d8266c234a7e2b3410a43d *data/exampleTrees.rda
fbf7c0e2f3cb2370ba5ce0f6c3848b0c *inst/doc/trees_with_root_edge.R
025cca72fe06105d1701c4286042418c *inst/doc/trees_with_root_edge.Rmd
cc9b150b5ee30575cd0f02b9c5e9abf4 *inst/doc/trees_with_root_edge.html
dd1c346ee2f6039e2b23bae372b73a7b *inst/doc/vignette_get_nltt_values.R
cab2b52004e515ee8be7161910dd015d *inst/doc/vignette_get_nltt_values.Rmd
fe5f6d7290416c232465f00d1d26c4a3 *inst/doc/vignette_get_nltt_values.html
28ea0c4ddb362a99ffa1022062dbf693 *inst/doc/vignette_nltts_plot.R
b4c4e5443584ae181c777e7d8cc279c6 *inst/doc/vignette_nltts_plot.Rmd
49b35957685080837685c2f986936f28 *inst/doc/vignette_nltts_plot.html
55abbeee6ba2e0af640471ac5504e0bd *inst/doc/vignette_stretch_nltt_matrix.R
56af887ca68d2cbb8ff8bf9cc71d53a7 *inst/doc/vignette_stretch_nltt_matrix.Rmd
59ad34a46e687aaa4105289515ca8173 *inst/doc/vignette_stretch_nltt_matrix.html
035b4c1348cd13cfa9da8dcb7c78ed78 *inst/doc/walkthrough.R
aac55b0d83774608e5b0c545abec81e6 *inst/doc/walkthrough.Rmd
0baa85c163c9a32687a30b1f08980339 *inst/doc/walkthrough.html
f0390884f92421cff34972c5ada87a02 *man/MCMC_nLTT.Rd
9497baf4ae12a4e861b3a55a2096ad8d *man/abc_smc_nltt.Rd
2ff4a8e406d65787b8375ad6259e096e *man/exampleTrees.Rd
fa2dae516239e098133c58b88c559f76 *man/get_average_nltt_matrix.Rd
7fe21bfa6baf0c727402ca84a7d286b3 *man/get_nltt_values.Rd
c7ea64c4173193daf6c8277dbb2621c4 *man/get_phylogeny_nltt_matrix.Rd
489325c7b8d98907d466517043db159a *man/nLTT-internal.Rd
a23ebaabba4c8e5af702a19aeea99741 *man/nLTT-package.Rd
7cb8dcce702deb163cfa452422604687 *man/nLTTstat.Rd
a95cd0d0bf2e54a47c0195b24ec59d1a *man/nLTTstat_exact.Rd
d6e3d022393e911a3bc1fcbc7de803ad *man/nltt_diff.Rd
f4d0ed171d59cbb21bf973c126843741 *man/nltt_diff_exact.Rd
a37c8a319ee2812647ffeac82a7ea95d *man/nltt_lines.Rd
e1cf2a07dad5fc00c9702230ac1bd5b6 *man/nltt_plot.Rd
5c150e03252c77f111c8f17c2cfde9ca *man/nltts_plot.Rd
0100a45a9959fe357e943e67f3812f96 *man/stretch_nltt_matrix.Rd
b8b50ed3f56a110f64210a94d25e359a *tests/testthat.R
8549949e7cb031510317777a5ce2a0f0 *tests/testthat/test-nLTTstat.R
f7cafef651f22a04a7ea4a5f44c70aa2 *tests/testthat/test-nLTTstat_exact.R
fe044196aa5d83206ac56a0b09221cc8 *tests/testthat/test-nltt_plot.R
10cdefef28ed05a1fa615d06e1d4aa26 *tests/testthat/test_abc_smc_nltt.R
1e4c6b03d7113aee6b15ab892c3323f5 *tests/testthat/test_calculate_weight.R
d7640a667cff047ef7fc326242b70444 *tests/testthat/test_get_average_nltt.R
a9e846a9086ddda74955d333710bb338 *tests/testthat/test_get_average_nltt_matrix.R
9a71c9b1142631aed404cb9603dec323 *tests/testthat/test_get_nltt_values.R
c0f61bcd06b0e71075ce65a174d6d979 *tests/testthat/test_get_phylogeny_nltt_matrix.R
3dbec38a5258cf48739d49134b9a5875 *tests/testthat/test_mcmc_nltt.R
df79bfbeaea7c0b5a2f1a7279b59e3e9 *tests/testthat/test_stretch_nltt_matrix.R
025cca72fe06105d1701c4286042418c *vignettes/trees_with_root_edge.Rmd
cab2b52004e515ee8be7161910dd015d *vignettes/vignette_get_nltt_values.Rmd
b4c4e5443584ae181c777e7d8cc279c6 *vignettes/vignette_nltts_plot.Rmd
56af887ca68d2cbb8ff8bf9cc71d53a7 *vignettes/vignette_stretch_nltt_matrix.Rmd
aac55b0d83774608e5b0c545abec81e6 *vignettes/walkthrough.Rmd
