9f187334f245e5474e95dd72946236c0 *DESCRIPTION
42ce791c27b1feb82c887918f9c3a59c *NAMESPACE
b9cfe0c2da73ee4ec2fc541a91d49ee2 *NEWS.md
0401125f0e8d60c520ccea03a1aa5d82 *R/CV_partition.R
3aea54a6338b05c73668d9e1d404bd87 *R/IBD.mppData.R
2dbe6a9ec37a618fe7510ee1259cc684 *R/IBS.mppData.R
c022329f79b0bb0cc99c71df879bad60 *R/IncMat_QTL_MAF.R
abd50b80cb455e9a52df6c969c23e8d8 *R/IncMat_cross.R
22357929829c2f0458105c5d59489142 *R/IncMat_parent.R
f746c6c76d84af64403dfe61b507ed1a *R/IncMat_sum0_const.R
c858fa1ac62e473c6fa4c689b4e3242a *R/MQE_BackElim.R
c0bb81d1380f5e19208267dfffb88c3b *R/MQE_CIM.R
a5c433de6d2ef011fe684aab5fe747c9 *R/MQE_CIM_clu.R
9b5974de35bdebaaa7abce5372d23af0 *R/MQE_R2.R
76d3e9c4cdd6182df59ad4d3509338ac *R/MQE_forward.R
59d335a96b1c5c1cb40b4af4ffa8db21 *R/MQE_genEffects.R
604d944ca673fabd9e1931db6ff03804 *R/MQE_plot.R
85fc1983d1ece0c70d99b6e0f47eeabf *R/MQE_proc.R
9b4e78b67b594b7c20bf3f5c74dd4c0a *R/QC.mppData.R
f573fdd2fb33901ddd8cd34f475ffe55 *R/QC_GenotypingError.R
40b7c2209cca4aea9ce71ffd0549f519 *R/QC_MAF.R
d240d9ede48a64be09d3848cc5903796 *R/QC_hetero.R
aa0356a95e59b65b7c480be2c3f5ce3c *R/QC_matchMarker.R
ee2e8d5a3b432c24f7df77220800c121 *R/QC_minCrSize.R
98b787708ba6524561480c4db69205f3 *R/QC_missing.R
e402b60c7f810b34671ffc26603ca0d8 *R/QC_tagMAFCr.R
247980f379c2b0896d64574b1e123aae *R/QTLModelBack.R
ebdb60a99a032fa8af3e2eecb801c594 *R/QTLModelCIM.R
4219e507d050c559acda71eddbbd199a *R/QTLModelCIM_MQE.R
4a41dfcfd132228469790ba41d9a4ec6 *R/QTLModelPerm.R
0133e807ef31238827d8f95831757d08 *R/QTLModelQeff.R
94fa0fc21a3afccf40f90b54ac7a0876 *R/QTLModelSIM.R
465b7c0a13666a68b845f3b690e4aae3 *R/QTL_CI.R
2c544264121529045197d2679afd37f3 *R/QTL_R2.R
968a4f2d1cc6e91fdc845db8a80a05f5 *R/QTL_gen_effects.R
6239c21448b6326dbe993095baf520ec *R/QTL_pred_R2.R
1aa2ba0b04741f6b60345a16139b212b *R/QTL_pval.R
672cfa531ee58997ab97ab909fc75f7b *R/QTL_pval_mix.R
5325421ed2ead9cea217bb06f8c7909d *R/QTL_report.R
16116198f5b4b54a70215fbd4446d954 *R/QTL_select.R
2fe7eddd0697070bc2c2c4f96aa88898 *R/Qeff_res_processing.R
498f7d2f09922bc573948e95c5eef417 *R/Qeff_res_processing_MQE.R
bb9f48d2ab2818282ae5506309c20f5a *R/R2_lin.R
8ae64ee9b4a2b59ee01a24410b0b7e23 *R/R2_pred.R
34d400900d186aa371f669b5c71aaf9d *R/check.MQE.R
5d424842410fcf61e52043c4480d05b0 *R/check.cr.ABH.R
1df51d9b72b94ae86f0c24f120b02980 *R/check.inf.R
8b3b08538e8dc5f5ed37c8770abe6c33 *R/check.model.comp.R
7544baa76b1b705d7bba7ad82fbd7f89 *R/check.mpp.cv.R
88da17754cdc76ef809d063f27af50d7 *R/check.mpp.proc.R
6da2fa1d4898e70d3ae6ce0eb5d90d16 *R/check_IBD.R
d8b35984f5f93c3359e1ec5931dab2d2 *R/check_IBS.R
f3755c95e799302ba4159f49de29cbe3 *R/check_QC2.R
346a1ca47f23a261541b2f2796f3b725 *R/check_format_class.R
f5918b59a7fd87f24c21e9010a3e2af6 *R/color.code.R
736ed23a5c93c4b09e3ae51cdf09cc25 *R/create.mppData.R
629a62eb7eb412b614e939823844b917 *R/cross_ABH.R
a13fc58fbf36b2fa9c17583a59fbcd03 *R/cross_ABH_het.R
11d97f37ca661a4db4705ab267d28756 *R/design_connectectivity.R
cd7cee50a60e0ad6c3c387b0050d2719 *R/formula_backward.R
3dca94c877dd7e96336bfac66bec3d40 *R/geno_012.R
2b1f0edbb00666efaa58c0aacf149a0c *R/inc_mat_QTL.R
9688ba4c0999795dd06e3c9580e8c266 *R/mpp_CIM.R
42b68df0c853eb58d1b727a2906f7f43 *R/mpp_CIM_clu.R
8f9cfe663b63a654f1b47495c949f41d *R/mpp_CV.R
2f0d50f6611c8ec23946f664df05ef27 *R/mpp_SIM.R
99de43f5aeaaeb03197427ebecf257d6 *R/mpp_SIM_clu.R
398b22729f299021edd35a986b1c4fb4 *R/mpp_back_elim.R
df8de9b1fdd0cd94529225ee0a782551 *R/mpp_perm.R
9f9a01564ad34b7ac5d0d3aa1098c1d4 *R/mpp_proc.R
665dec83dfa5256b4685bfc98d63cfef *R/parent_cluster.mppData.R
4f9453aa4f07159958b06aa2b4c56566 *R/parent_clusterCheck.R
195e52a842dc0d614db433ed76c7a153 *R/plot.QTLprof.R
08052a45ad52b1e1a42ceb20b5a7a4ae *R/plot_CV.R
4838f4a58fa1677e8f564129d5842d15 *R/print.summary.QR2Res.R
bd89741e42440bb199c90e59199d71f3 *R/print.summary.QeffRes.R
dd47479f2d60e26914624702652f261d *R/print.summary.mppData.R
4a808ae38ac28881ce11273b11c20a2d *R/reference.count.R
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f921f583a3857e72ce743ea29b1fffa3 *R/subset.mppData.R
4ccfbe4a40aa909bc320742905f180ec *R/summary.QR2Res.R
046c8532f69ea696ed3f22b50e2118a6 *R/summary.QeffRes.R
53e2493695a4cb1a28b3691c74b56b0d *R/summary.mppData.R
d4f9eb227148aef0a94a191d2dda1cf8 *README.md
1bfb79bc3a16765c7687bfbf20295047 *build/vignette.rds
9b7d7f8f1ea8d8b62468cbc2ac6a3120 *data/USNAM_geno.rda
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ab29777d45920fec562eb5101d08aa39 *data/USNAM_pheno.rda
3def310b48340086bf098882cb04d779 *data/datalist
131f24c6d53947cf1a351a21e2d2cec5 *data/mppData.rda
ddccfc91dc8f861cdbcd8e8ca5c3e0e7 *data/mppData_init.rda
151bc44ca5b2d2120bd3aca18bef1a46 *data/par_clu.rda
7bc51e6caf5cd4cfa8505e69d13b5a08 *inst/CITATION
40070336c995b5cf60efc88140dda978 *inst/doc/mppR_vignette.R
d7fbf2df165c35f90507263388b7d84f *inst/doc/mppR_vignette.pdf
674e33afdbbacff3fd509f8cbb6d6fc3 *inst/doc/mppR_vignette.rnw
ec358f2da11ba4e60ab156ff4c409314 *man/CV_partition.Rd
62e801f9390411e82f3c8f3c4e13de49 *man/IBD.mppData.Rd
29b91a60f58eb4229ab4e73a5d86eb3b *man/IBS.mppData.Rd
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ae84e33f693ac5e422372fb7e85d820d *man/QC.mppData.Rd
d27859d3aa6e713782f3efdad7aaa0dc *man/QTL_R2.Rd
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4556912ab6267e0f1ad248eeea84ed67 *man/QTL_pred_R2.Rd
5942478c07125b274315ff57e1d8847f *man/QTL_select.Rd
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9bde96ae49acbeb3ebeeb08520656d0f *man/USNAM_map.Rd
38b51f9051792383d335c8478bfd91bc *man/USNAM_pheno.Rd
1e96407c374786793f32073fa221b982 *man/create.mppData.Rd
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0d4206e33f5871d283d54ecda6f9c044 *man/mppData.Rd
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834baaec4fcc65d99b619d0ee1c6d8f0 *man/mpp_CV.Rd
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5af5f630c0719083a2f51ef88425876c *man/mpp_proc.Rd
5051003f93d1315107c4efa59e3c8635 *man/par_clu.Rd
a88991e9a55d959cab0efce6907d7a10 *man/parent_cluster.mppData.Rd
6214f7cb4a084da06ef625a133c55446 *man/plot.QTLprof.Rd
1bc1219b2294247aab177b8c03380e67 *man/print.summary.QR2Res.Rd
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0863bea1e8a94a1ae0e34da49ac9a498 *man/print.summary.mppData.Rd
260e9ac19ee05f44ffb6275216634adb *man/subset.mppData.Rd
b5cfc72e591d5e2f980e95de7de23104 *man/summary.QR2Res.Rd
562d468bbc8f65be522772c9504a399b *man/summary.QeffRes.Rd
d7326c649ac6237fd0975e68258270f7 *man/summary.mppData.Rd
3579841848386581448c11b1ed37529a *tests/testthat.R
13e3f7569f2d8b82f41c765fd7e2126c *tests/testthat/test_CIM.R
4620a118d2f9d5ab5a533321654477e5 *tests/testthat/test_MQE_proc.R
3e6afb0e8daed7eefe1344ea74ef1618 *tests/testthat/test_QTL_R2.R
8e192ab066b1f6037c1027742bf05d90 *tests/testthat/test_QTL_gen_effects.R
d4d21aff5e7840f23c941f32007f3f90 *tests/testthat/test_SIM.R
47680f8b266a3de20ab090f07afae5ba *tests/testthat/test_mpp_back_elim.R
6895047df8a554c7ec923154e729f094 *tests/testthat/test_mpp_proc.R
bd3232ee30890a7afb7d95b0272a68ef *vignettes/bibliography/Bibliography_Bibtex.bib
b268a67d9f7116b2cf43e1f15076b491 *vignettes/bibliography/Bibliography_Bibtex.txt
56e806afc28cbd4c273b0947c6da0290 *vignettes/figures/QTL_profile.pdf
f3abea1bd0d44d3546af74fc84959699 *vignettes/figures/connectivity_example.jpg
0a015f67b0c8c6069e817c9382a99f93 *vignettes/figures/gen_eff2.pdf
c76ebd969a8d3cb222af100154ab9654 *vignettes/figures/plot_CV.pdf
8de3a16a491152f1c432fcdbb074cdb7 *vignettes/figures/workflow2.jpg
674e33afdbbacff3fd509f8cbb6d6fc3 *vignettes/mppR_vignette.rnw
