497576e6b35338bfa3367ebdd5d24cee *DESCRIPTION
03fc4cb571edde06ba04c6d83943b2e8 *NAMESPACE
002b11914eba1916f9a0f78b48e96073 *NEWS
8c31d784f33763bca51e007d6211a2e0 *R/AIC_momentuHMM.R
3852de3bef5d34d3efe1e5bba0b827d0 *R/AICweights.R
0ff783e061af52c7d03a597ee79c0574 *R/CIbeta.R
5285b506e625212d83a90861ebf7dd88 *R/CIreal.R
28f72204d67b88ca92e33d8342ffba78 *R/HMMfits.R
01768d1cd6d36a1e15ea3239140866ba *R/MIfitHMM.R
4633a118179aa0515b3e6f2f9339b058 *R/MIpool.R
42bfb9d4f25299c2e454ad56537c68bd *R/RcppExports.R
95f7c73c38e222d2eb69ef34c57fc1a5 *R/allProbs.R
4d2ea44018a638f3b67a232fcfdcf8ff *R/checkInputs.R
7493be5f541a84bb61c32963358fb3e4 *R/checkPar0.R
dd5e116be9ff408185baa2a72328a9d1 *R/circAngles.R
39ad735719ad44b8f7f1115c95830270 *R/crawlMerge.R
89b5389e3a7b34ba36f776ac31a7d6fb *R/crawlWrap.R
d0fde0601947308d2705960803cf54dc *R/crwData.R
4422c3310fb574c0430efde13c6218be *R/crwHierData.R
0b8b98326b5f7ad3efee6655520c7951 *R/crwHierSim.R
5a698331ceadd4faea578b08824eea12 *R/crwSim.R
d9eb79ac72a971db83307fdce825fb16 *R/distAngle.R
3c1a99cb73a31fffdce5dba48d85ac57 *R/exampleData.R
4014c12774f3a99a1adcd3f40fa7082b *R/expandPar.R
29a2eae87ec1129754116226f39109b7 *R/fitHMM.R
b2f3fcafd30e74738c7994780a69fec9 *R/formatHierFormula.R
27feddfbb93b6c746cfe360f479af1f0 *R/formatHierHMM.R
90bbcec48f87bdbde7a7aec06145b583 *R/formatRecharge.R
e867ef40535633edd612b9fcc7928cf6 *R/formatmiSum.R
5494f06b571a3f5f9eabe10319d6b373 *R/getCovNames.R
0631cffa696c4f5d7c751538158884dd *R/getDM.R
cbd96d48930ee32f3c35a46eb975380c *R/getPar.R
4d7871ad5b53fc5c317c361a091c3276 *R/getPar0.R
311470bcdcf4ae5418478aa7ac105a19 *R/getParDM.R
cf7b5816bb5aef4b74845330bdd6c5fe *R/getSplineDM.R
fec97415293226677b7ebc13bc387db4 *R/getTrProbs.R
39acf3cd5137d3053f909a7994d2441f *R/getWorkBounds.R
1f06521e24c9d3ac65bbfe0b00c7cccd *R/getXB.R
efc9dd5ec76a606e4a2e7d42e636d15c *R/get_fixParIndex.R
ac4671535d40f4bf68df6e9998fafee6 *R/get_inflation.R
aae74cbee7fa124db4e7e74166b799ab *R/get_ncmean.R
defea10aee62afcfd6bb52f0f5c52312 *R/get_retrySD.R
e0b51be9a73a60b3a5db0a2c0710d82c *R/getboundInd.R
faa05ff80e026973b73a59461a981f15 *R/is_formula.R
46adfdc4096ed7e7d935cef119089166 *R/logAlpha.R
80dea265ce0fdb13920d5be56c391fa0 *R/logBeta.R
eebe8b3ae6edb392fc61233e8394e28f *R/miHMM.R
af7788b9b41992fa95bea1e5ab2b09a1 *R/miSum.R
3ef5bafdc1c6cd8ea76ef7ab109e6b6b *R/mixtureProbs.R
c1d5cdeeea4aa7d5ae044184f58ae6e5 *R/momentuHMM.R
775930039920b42f9c5f31b5f58c4292 *R/momentuHMMData.R
fcee893066497015a2aff20a83985db3 *R/momentuHMM_utils.R
a60ed2a97a52674285b4e49af5ba1e67 *R/momentuHierHMM.R
b3fbe60e65c9a720e759a3501dfc2e2c *R/momentuHierHMMData.R
67765aec21fa1da2ae859ce694baa076 *R/moveData.R
7553284c8906cc9ba6f5ce150e7bd828 *R/moveHMMwrap.R
58708605ff287df5ddc3a7cda822b4d0 *R/n2w.R
5ba4dc5a1268ee55c9d2497b2b64a21c *R/nLogLike.R
1f4fd0c942c3b9caae7bf95c71c491ec *R/parDef.R
2ae5db91037a358c5f0dfcb16a5088d0 *R/plotPR.R
0342bbe18566303b1797bc98976b26ff *R/plotSat.R
4d3fbacd0692f4d6a9bca2afb8fba0f3 *R/plotSpatialCov.R
787001d0918ed64f7b9038cf02177e53 *R/plotStates.R
af58ef342e22d481333f906c349f4bda *R/plotStationary.R
b5281d959772348efb65b29113596a85 *R/plot_crwData.R
a4b6771192cb6192b8c96dec104f4bc1 *R/plot_miHMM.R
d4f34833f222ea256fb2802d01d28dff *R/plot_miSum.R
bbe90d4d0c0d2d89b55abf7629228400 *R/plot_momentuHMM.R
2410e35e9beb1e35a1c5b1d7e5f0a103 *R/plot_momentuHMMData.R
dfc2b7adde14ba77043920695fddb988 *R/prepData.R
0e0ddb163beadf425bd1d2c1f2f7e413 *R/printMessage.R
ec517f501d1b8354fed15b9f89f89a85 *R/print_miHMM.R
720b7d3bc2b62d8a6f3c8ff9e291d81b *R/print_miSum.R
80026ee119b10ef76aea2cac6612a38b *R/print_momentuHMM.R
1d7926a58d6fe86e1e324095f2fafcbf *R/pseudoRes.R
7e4afbebe3ef42a5a8d5eefd32387467 *R/rwrpcauchy.R
a113d790afcdc2d778f4cd30084d3f9c *R/setModelName.R
427b7f2d8cebafedf4c52420e679c89c *R/setStateNames.R
3d013e42884ea03ed431bc9704668a03 *R/simData.R
013b056eb53007f8e34e222a06e52e87 *R/simHierData.R
e21a5be05ee0ac04729effe712cbf414 *R/simObsData.R
3effa981533037a0710b96a160b83c99 *R/stateFormulas.R
1dc39027078766a844871e69cfffaa7f *R/stateProbs.R
ebba0c82bc4d81ccc2e6a1983bcb9bc1 *R/stationary.R
48346ddccaa8c8e761b15fe4dbc00e22 *R/summary_momentuHMMData.R
dc2ade4d29e1e66599fe385d25388123 *R/timeInStates.R
5bbb9b34d8f01ea8ff3bd9ef965243bf *R/turnAngle.R
d2ebaba2646805a4f522ec3324851586 *R/viterbi.R
ef455a709de33377ac0606b6e27ba4e4 *R/w2n.R
38ff849402284288b6d7facea6ee9826 *README.md
b1dabb243f43b086abfd85e65253d409 *build/vignette.rds
cd3f45c356306be03469c50fbcb6ebc9 *data/example.rda
c6ee6ba98f69cfd1f917f8f0a99791ff *data/forest.rda
7866444f86c581193affdad4bd7de931 *data/miExample.rda
cc2ab733f72968df6da42bea70151e14 *inst/CITATION
22555b19cf4cc4be26725cb6954d4cde *inst/doc/momentuHMM.pdf
3a3964f218a6279b45722646cbc3d1ea *inst/doc/momentuHMM.pdf.asis
5962039b23ef65655cbedda4a986351e *man/AIC.momentuHMM.Rd
ffd2f080bfc196b9db5daf4f7e5ba3cd *man/AICweights.Rd
44bf8518451bd535f71b885ed70d351c *man/CIbeta.Rd
00f029e82554a2a7d7c8c893c24a453b *man/CIreal.Rd
d291cd606b79396b656a662585580092 *man/HMMfits.Rd
862117190d89bcad9dfd6239b8d8db74 *man/MIfitHMM.Rd
b5090f76e96d88154a9a96ced2403591 *man/MIpool.Rd
d4b83196982d76c8f9aed75a12365822 *man/XBloop_rcpp.Rd
3ab767f6d0605212b9740e2a0a6e4198 *man/allProbs.Rd
7fe9d1a83cbd56f00df6751608aa6add *man/checkPar0.Rd
6e32f6d5350e2b0ceab9d6de60c806a8 *man/circAngles.Rd
b75bd451442914259d489ffe48165c13 *man/crawlMerge.Rd
cbd58ad1395f621566e7441792b52d05 *man/crawlWrap.Rd
d88134344d8e5940f1bda0ddf76503a0 *man/crwData.Rd
0737cc7ac7a95f1949f9936b934f15f9 *man/crwHierData.Rd
bd8db9d5e11b22679549000cc8c92867 *man/crwHierSim.Rd
7c4f0364b276f37ca5469c7c6c7e5a12 *man/crwSim.Rd
e535053ebd10b6688fc9b43db4fd03f6 *man/dbern_rcpp.Rd
5441f92d4a0edf89fe246e611ae20d2a *man/dbeta_rcpp.Rd
deea42c16a04ed9ac0caef750ec293b4 *man/dcat_rcpp.Rd
953a2c8322835daf83aa938ce45b9aca *man/dexp_rcpp.Rd
71b84c528e1770689c60b5ea9aec947b *man/dgamma_rcpp.Rd
fe00316f145c1c371ae337861623e7b1 *man/distAngle.Rd
d941188f0a5fa30c719a5ae93fa1318f *man/dlnorm_rcpp.Rd
1b326d7b679b22251da7c9116bbbfe47 *man/dlogis_rcpp.Rd
ed861141fe130e126bc2848ce8423c51 *man/dmvnorm_rcpp.Rd
a9720ab3a41621a512df73f29019e33c *man/dnbinom_rcpp.Rd
aa18dff0eb871621b5f2febdf59dd27b *man/dnorm_rcpp.Rd
faddd36043704acbae96a6ab880addb9 *man/dpois_rcpp.Rd
6f66a1b2a39b57b2c5b0fde19ff3c6f7 *man/dt_rcpp.Rd
c331d29d31c63bd1362d0a6e347848f5 *man/dvm_rcpp.Rd
c8420c448a9d8ad8c2fe5f5ea309de93 *man/dweibull_rcpp.Rd
66551b21df0122b11cbe482c094c8b62 *man/dwrpcauchy_rcpp.Rd
6664548c43a5f6905ff30a6757571e65 *man/exampleData.Rd
ae3ac139e05bd50cde9e7f765206ce57 *man/expandPar.Rd
d22da22a6d36bbf27c9abe176d1d9eaf *man/fitHMM.Rd
8e3f3041a7a1631f3697375cd681b143 *man/formatHierHMM.Rd
df7ef0066b8a197871aa692b10487159 *man/getCovNames.Rd
cacdfb8ec83709a43c0fcfe1df8288ab *man/getDM_rcpp.Rd
5dd6595b2b47705da596e850cc4ec01e *man/getPar.Rd
8160a26e33828cbe51cb78f8fa7bd35e *man/getPar0.Rd
d4bce3de9a93f65a77d99f2b4449937c *man/getParDM.Rd
e491fc1c62a2cd7219b4dd2597ed80d3 *man/getTrProbs.Rd
6375fc4db9a7c07d05fa4f7613dca4de *man/is.HMMfits.Rd
769f8269e0796d1b55b410a736004467 *man/is.crwData.Rd
e43492d53fa25767d98505b6a276c068 *man/is.crwHierData.Rd
ed34a9300ec7ae300ecc2b1974e548e0 *man/is.crwHierSim.Rd
295ab23d1cf4ec04454bb7ed4c956754 *man/is.crwSim.Rd
cfd70d5888ef05ce290bceb03d78b745 *man/is.miHMM.Rd
f16b45b1684dae4f2583f222a4bd1580 *man/is.miSum.Rd
f1c5651d7cbc38ad74adea650fd4d50d *man/is.momentuHMM.Rd
4425b3ad0d541ac7b994646b80866c7f *man/is.momentuHMMData.Rd
9d4e97862e29e2cc2b2be7e39f964f5c *man/is.momentuHierHMM.Rd
1b96398140e2064476de9a2d6d56d12c *man/is.momentuHierHMMData.Rd
63bb4ded4473223776adbba23e6bc506 *man/logAlpha.Rd
4fec03e00f48213011bd666e132ee856 *man/logBeta.Rd
1b6981f572cf4e63b831c487dd960d79 *man/miHMM.Rd
6b453dc727b22323858a9a5c3c8e6cf3 *man/miSum.Rd
8ea3595126bc61811ce0f1661e88f98d *man/mixtureProbs.Rd
0c3b52a2e7fbd8ffa53154606f301eb3 *man/momentuHMM.Rd
5bc98273d05ea49b6e4ccd09e89a0e51 *man/momentuHMMData.Rd
4acffdc3950a575158caa03d81ea86e4 *man/momentuHierHMM.Rd
8079e8d10f5e5aaffeeec117b9ca22a3 *man/momentuHierHMMData.Rd
ef92e6ada14e93e8039994274f5a84ad *man/n2w.Rd
367cfb3e514363e09d87ffc6c4375139 *man/nLogLike.Rd
0f086b0107f671eff8c0d5ee88fc9c93 *man/nLogLike_rcpp.Rd
c06ce14c03b070a5e0a521e74df110d8 *man/parDef.Rd
9a52bd80ef22a3338c4740b07b80bec8 *man/plot.crwData.Rd
7881f586fc95693adf28f82aa383b190 *man/plot.miHMM.Rd
be3ec671869b9bc0a6f3a035a3f262c3 *man/plot.miSum.Rd
f228ed68c1e0321ab9f9734b481a0c2e *man/plot.momentuHMM.Rd
2362e2f8a87074ef81b76de7ccd5a3ba *man/plot.momentuHMMData.Rd
6f8076ab65358de23d9a712443982a57 *man/plotPR.Rd
fd1a2923b25f81d58c85b052af106c7c *man/plotSat.Rd
a5b8f837d24a08f4e2ed29e9bb451d56 *man/plotSpatialCov.Rd
17aaa0e42253d52bff1770d27221f193 *man/plotStates.Rd
d7c6f668f743b7daa528dddb92aedb80 *man/plotStationary.Rd
b72ffe4ae6877a4afea578ccdfb574d8 *man/prepData.Rd
a4bb5d4acdaa56880d2678d377074aca *man/print.miHMM.Rd
43c37aa46fb2a3ea57fc3e4098d0c595 *man/print.miSum.Rd
c2782db85eb43caebad85483eb7b3b56 *man/print.momentuHMM.Rd
5046639ffcb90c15419225e0b51e3766 *man/pseudoRes.Rd
9eb60ec8b638fd09af4d68860380aecd *man/setModelName.Rd
58d422e2022e310b3371a8fa258798dd *man/setStateNames.Rd
fdcbc38ab465c73fa642d9319f5fd5cf *man/simData.Rd
5d9404fe72809e07932019fe1e6eb5a1 *man/simObsData.Rd
1621e4a4808c463cf05fdf9a23e79e37 *man/stateProbs.Rd
cd85724c99c99d1bebae95672c19c3f1 *man/stationary.Rd
bcfdf67c70c2957e1c42cd94ff8f83ec *man/summary.momentuHMMData.Rd
eb83f0266e6ff5c74eb0a1bc0a42964c *man/timeInStates.Rd
ee3358fb8723d77fc500327c49f70672 *man/trMatrix_rcpp.Rd
d020111feff192e6ea8f281e1836c62a *man/turnAngle.Rd
1eee14623875d1a06b3ea02dd6c2f938 *man/viterbi.Rd
bece23abdc58b4343b17bb4daf4779a2 *man/w2n.Rd
8e6e6637c2eecd8e072911d063d4e108 *src/Makevars
0d7c173dc5b63c740d6f0f8a839d54ad *src/RcppExports.cpp
f2317558385acd50e1ae23f025330e0a *src/XBloop.cpp
0feac1d041e09c185f9f7636fdfa8dbb *src/combine.h
c7c5547011778e262ae2fa3d227f1b9c *src/densities.h
07f72ae58e5fd258cd9a3d78678ccb11 *src/getDM.cpp
99cb2eb726504aa251f98783db1f6a92 *src/momentuHMM_init.c
dfb243eb7cee54c7acfb4a711f1a751d *src/nLogLike.cpp
b99907d8a0d34a193542a13b518f80f3 *src/trMatrix.cpp
5b7de86335207c0bb8ce6108da4c150c *vignettes/examples/buffaloExample.R
d30a422a11dbc08dace45d4bfba6b12c *vignettes/examples/codExample.R
2a0744f9022ae376765b4b4cc100e463 *vignettes/examples/elephantExample.R
5d8205742196d1dbc6330874f468d4e5 *vignettes/examples/garterSnakeExample.R
80ea34f6fc48821ac7a876018d6311c1 *vignettes/examples/greySealExample.R
b6ef9c8f473a7567979d7dba19f11ddf *vignettes/examples/groupExample.R
1e562fa4d270d3e174a5381c00995b77 *vignettes/examples/harborPorpoiseExample.R
4f086e0ad7cdf3c3c83e7181a9b2c1da *vignettes/examples/harbourSealExample.R
77ee7202a1936acabc537a9f18642b63 *vignettes/examples/hornSharkExample.R
93212113d2a2454ee30abc3bcef5c55f *vignettes/examples/landConstraintExample.R
82e82cc67fafc679c7e447739336df1c *vignettes/examples/nfsExample.R
74cf8e0b5439b36c5f20204637ead11d *vignettes/examples/northernFulmarExample.R
26d630108e56f3d575af35f4f1a3c76c *vignettes/examples/pilotWhaleExample.R
f3264158b0d1ecb42ee017cb06afd13d *vignettes/examples/sesExample.R
a68c257bb44084aab74b7def1584c8a4 *vignettes/examples/turtleExample.R
3803fa6d6ad0d15bd046f81865916205 *vignettes/examples/turtleExample_rw_mvnorm2.R
3a3964f218a6279b45722646cbc3d1ea *vignettes/momentuHMM.pdf.asis
