Package: minimapR
Title: Wrapper for 'minimap2'
Version: 0.0.1.0
Date: 2024-07-11
Authors@R: 
   c(person("Jake", "Reed", , "hreed.ga@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8384-3593")),
    person("Pradyun", "Pulipaka", , "pradyunpulipaka@gmail.com", role = "ctb"))
Maintainer: Jake Reed <hreed.ga@gmail.com>
Description: Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. 
	*SPECIAL NOTES 
	1. Examples can only be run from 'GitHub' installation.
	2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required.
    	3. If using a Mac operating system, installation of 'Homebrew' is required.
	Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".
License: MIT + file LICENSE
Depends: R (>= 4.0.0), Rsamtools, git2r, pafr
URL: https://github.com/jake-bioinfo/minimapR
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-07-18 16:26:22 UTC; jake
Author: Jake Reed [aut, cre] (<https://orcid.org/0000-0002-8384-3593>),
  Pradyun Pulipaka [ctb]
Repository: CRAN
Date/Publication: 2024-07-21 10:10:02 UTC
