# Generated by roxygen2: do not edit by hand

export(cal_fn)
export(cal_fp)
export(cal_met_snp)
export(calculate_percent)
export(calculate_simpson)
export(check_percent)
export(find_optimised_snps)
export(full_merge_1)
export(generate_kmer_search_string)
export(generate_kmers)
export(generate_pattern)
export(generate_snp_search_string)
export(get_metric_fun)
export(iterate_merge)
export(match_count)
export(merge_fasta)
export(output_result)
export(output_to_files)
export(process_allele)
export(read_fasta)
export(read_sequences_from_fastq)
export(resolve_IUPAC_missing)
export(reverse_complement)
export(view_percent)
export(view_simpson)
export(write_fasta)
import(data.table)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(utils,write.csv)
