17132f467d74d4c6d43f49ef19b44d3a *DESCRIPTION
2fc9ae9291615dc62ba9c17ec1a773ce *LICENSE
40a13c28cb9460f21e3d4a2a2abeac81 *NAMESPACE
f981fdb3a6c5b50cca9bb78d2384f0fb *NEWS.md
1829b40bf080c441d483a1ebdaef9110 *R/output.R
d4d2cc428682e8c64ffb68854d3ad073 *R/process.R
f462dfbdc2bcc6da7f6603a0ce90bf7f *R/search.R
472b44cd760ff1dc4fe321effe70eb15 *README.md
5b165b5bea66e967444014359e26f534 *build/vignette.rds
3271f3134b66cb7e88699361bfc5b564 *inst/doc/MinSNPs_Workflow.R
9f4734102a06278a1cc3f3c5b6e218b3 *inst/doc/MinSNPs_Workflow.Rmd
c09f01de0b2295107814663d59da70d3 *inst/doc/MinSNPs_Workflow.html
418494447d78713c575f4d82a66c1094 *inst/extdata/Chlamydia_1.fasta
a912cfb8fb27e412022f2f39f585dd44 *inst/extdata/Chlamydia_2.fasta
cc8f4f58496d75c56a20378d6f2a1222 *inst/extdata/Chlamydia_mapped.fasta
2e4fd33033cae8dfea8eeafdd5d15b79 *man/branch_and_search.Rd
f9f7b81003b9521c0d2c5d34fec6602e *man/cal_met_snp.Rd
516b2f74fbe53bfddaa18bf3de24145a *man/calculate_percent.Rd
db52471b773f299f09ab835bb11f057f *man/calculate_simpson.Rd
d363651d0ad6066f196a1e1e672f3ea6 *man/check_multistate.Rd
09e87771f3a23fa5b90782959f6b8b57 *man/check_percent.Rd
412740b1edffcf30e6267e477db9b0ec *man/find_optimised_snps.Rd
d51ec7ac6becb3207a9907c09d8483bf *man/flag_allele.Rd
9f8bfd2a56a75ee3325d057974e597a0 *man/flag_position.Rd
d1a50ef8e3a86fbbe109a5daad65c5b4 *man/generate_pattern.Rd
c55670af7e789bb2c0839a4589249947 *man/get_metric_fun.Rd
6058ac3dab8ec9c1c3e2f12e59b56a23 *man/get_usual_length.Rd
9d2c7afd9e2ec4054719c558e2784248 *man/output_parsed.Rd
985c40e9ffd6de17c9f42e0fc7c78054 *man/output_result.Rd
931febc6b60e51e064462037e4a9a088 *man/process_allele.Rd
a76a78b378fd2ba398cecd3565f574ca *man/read_fasta.Rd
79b3720ce6deda12c568a388f2bf3a20 *man/remove_dup_allele.Rd
fad823b4adadd9dc32af5dd38688ecae *man/write_fasta.Rd
74949e8501a0f303bfc6da399d6f70fa *tests/testthat.R
2422bf8378d74acb946ef314d274a7cc *tests/testthat/test-process.R
9f4734102a06278a1cc3f3c5b6e218b3 *vignettes/MinSNPs_Workflow.Rmd
