Package: microSTASIS
Title: Microbiota STability ASsessment via Iterative cluStering
Version: 0.1.0
Authors@R: c(
    person(given = "Pedro",
           family = "Sánchez-Sánchez",
           role = c("aut", "cre"),
           email = "bio.pedro.technology@gmail.com",
           comment = c(ORCID = "0000-0002-4846-1813")),
    person(given = "Alfonso",
           family = "Benítez-Páez",
           role = c("aut"),
           email = "alfbenpa@gmail.com",
           comment = c(ORCID = "0000-0001-5707-4340")))
Description: The toolkit 'µSTASIS' has been developed for the stability analysis of microbiota in a temporal framework by leveraging on iterative clustering. Concretely, the core function uses Hartigan-Wong k-means algorithm as many times as possible for stressing out paired samples from the same individuals to test if they remain together for multiple numbers of clusters over a whole data set of individuals. Moreover, the package includes multiple functions to subset samples from paired times, validate the results or visualize the output.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: crayon, fmsb, future, future.apply, ggplot2, ggside,
        progressr, reshape2, stats, stringr
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2021-09-13 10:28:47 UTC; biotechpedro
Author: Pedro Sánchez-Sánchez [aut, cre]
    (<https://orcid.org/0000-0002-4846-1813>),
  Alfonso Benítez-Páez [aut] (<https://orcid.org/0000-0001-5707-4340>)
Maintainer: Pedro Sánchez-Sánchez <bio.pedro.technology@gmail.com>
Repository: CRAN
Date/Publication: 2021-09-14 06:40:09 UTC
