Package: microPop
Type: Package
Title: Modelling Microbial Populations
Version: 1.5
Date: 2019-10-09
Authors@R: person("Helen", "Kettle", email = "Helen.Kettle@bioss.ac.uk",role = c("aut", "cre"))
Description: Modelling interacting microbial populations - example applications
    include human gut microbiota, rumen microbiota and phytoplankton. Solves a
    system of ordinary differential equations to simulate microbial growth and
    resource uptake over time.
License: GPL-3 | file LICENSE
URL:
        https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12873
Imports: deSolve
Suggests: R.rsp, testthat
VignetteBuilder: R.rsp
RoxygenNote: 6.1.1
LazyData: true
Collate: 'applyTraitTradeOffs.R' 'assignNAsToMFGs.R'
        'assignStrainTraits.R' 'checkResInfo.R' 'checkSolution.R'
        'checkStoichiom.R' 'combineGrowthLimFuncDefault.R'
        'combinePathsFuncDefault.R' 'createDF.R' 'data.R'
        'derivsDefault.R' 'entryRateFuncDefault.R'
        'extraGrowthLimFuncDefault.R' 'getAllResources.R'
        'getGroupName.R' 'getKeyRes.R' 'getMolarStoichiom.R'
        'getMolarYields.R' 'getNonBoostFrac.R' 'getNumPaths.R'
        'getPHcorners.R' 'getStrainPHcorners.R'
        'getStrainParamsFromFile.R' 'getValues.R'
        'growthLimFuncDefault.R' 'makeInflowFromSoln.R'
        'makeParamMatrixG.R' 'makeParamMatrixS.R'
        'massBalanceFuncDefault.R' 'microPop-package.R'
        'microPopModel.R' 'onAttach.R' 'pHFuncDefault.R'
        'pHLimFuncDefault.R' 'pHcentreOfMass.R' 'plotTraitChange.R'
        'productionFuncDefault.R' 'quickPlot.R'
        'removalRateFuncDefault.R' 'uptakeFuncDefault.R'
        'rateFuncsDefault.R' 'replaceListItems.R'
        'runMicroPopExample.R' 'subsetFunc.R' 'waterUptakeRatio.R'
NeedsCompilation: no
Packaged: 2019-09-11 09:17:02 UTC; helen
Author: Helen Kettle [aut, cre]
Maintainer: Helen Kettle <Helen.Kettle@bioss.ac.uk>
Repository: CRAN
Date/Publication: 2019-09-11 09:50:02 UTC
