45c172433589d026205a1cb55d5eb154 *DESCRIPTION
c758c095365864b53ed3bae90ce6ac4b *LICENSE
5e08ac348f2907d1c6543d2581bf7f44 *NAMESPACE
141784cdec81ff5f8efaaa12c6ba666d *R/applyTraitTradeOffs.R
0699406e98dec147b5c696e65f0295b6 *R/assignNAsToMFGs.R
2ac26a30cd3e24c727151764b7919171 *R/assignStrainTraits.R
702d85bec9a4c5aebe0eaa8b6f4f8151 *R/checkResInfo.R
3df644bf6b7d1becf40c00ce1d40eb55 *R/checkSolution.R
24dd56369ca6aeeab7580e24da09493e *R/checkStoichiom.R
4db86aabfdbbf3d5898c117393a52539 *R/combineGrowthLimFuncDefault.R
0ab6a0d7c597e8633c94e777ee6772c5 *R/combinePathsFuncDefault.R
1c192a10beaa2ce4405022b050591e9c *R/createDF.R
16cb5658734c6b9c01d80871488dee34 *R/data.R
72dd980607088605a7585accfe41d08d *R/derivsDefault.R
fc834b6d27ee304a3e2de05759162103 *R/entryRateFuncDefault.R
e5ccd413694e52972caa4ee0847413d0 *R/extraGrowthLimFuncDefault.R
bff21562200906b4bbdc8a439834762d *R/getAllResources.R
9d78e837053ae1ce83afba273b8a2091 *R/getGroupName.R
78b1a214c5be6acc0ea7235ac0e0482e *R/getKeyRes.R
73d7f3d9ae3f138202a3a3ce02c72d4a *R/getMolarStoichiom.R
5df6388bb028daaa0bde99fee0b13c10 *R/getMolarYields.R
fcc7af9e1c61fe7c63c529f52f53d1d6 *R/getNonBoostFrac.R
acbabdf2a43ed4464757fc7841298e21 *R/getNumPaths.R
3b2d15dc73d14a2b51b975d616184e58 *R/getPHcorners.R
ee00c14d140fdbc59e78db732b1352e1 *R/getStrainPHcorners.R
c51fcba5f56c61ef37ea48d253c6cac0 *R/getStrainParamsFromFile.R
3eac92d434001ce700fbb8fcea81a0cb *R/getValues.R
03d2299da54222ab92c59918ac988786 *R/growthLimFuncDefault.R
e3e3addb68d4fb87553628c67d51ba28 *R/makeInflowFromSoln.R
4035bb499e97b0eb6c010dc509e1dca9 *R/makeParamMatrixG.R
ea6445c00e07fc84350dbe0859bf7e82 *R/makeParamMatrixS.R
f1531013eab1c8adef6ce498f014935c *R/massBalanceFuncDefault.R
8212b17bd2d573f4c4353b76f4157aa0 *R/microPop-internal.R
4a126ccc8443b84c03787976b5ae6fd8 *R/microPop-package.R
78773545d72a7a8eee2e4a82eb4b3b81 *R/microPopModel.R
39f22368a990decf99366640d89793dd *R/pHFuncDefault.R
70743879a6554dc5aada767c072c0d2c *R/pHLimFuncDefault.R
f1fbdbe53cef8b46947b72c4e4dcff9a *R/pHcentreOfMass.R
9ffbc90285a996dffe740d200d8aa9a9 *R/plotTraitChange.R
33fdec2eac0461447ded413ae98a2ee7 *R/productionFuncDefault.R
7a55f7472462a9bfb9fc923bb5afd34b *R/quickPlot.R
a76cd2ff5524564b171308a96c6fe8e2 *R/rateFuncsDefault.R
4e54e90767cf48f38b090bb81ba88f2c *R/removalRateFuncDefault.R
42a8329c9bebdf06a9a31514daf96159 *R/replaceListItems.R
e124e650df96e14f081e8ac24c81e057 *R/runMicroPopExample.R
e70c25bf2a2584d9aa9997153c378916 *R/subsetFunc.R
e87df5f6db9179ae5201d56ea620f009 *R/uptakeFuncDefault.R
d54cd12419d705dd2209182f8e7dca72 *R/waterUptakeRatio.R
69c350c6a790f8661870299f06c0d7fd *build/vignette.rds
c04277afa1263f3d67c1ee7234259ccd *data/Acetogens.RData
292bdac606760fa2b4087332d62c545f *data/Bacteroides.RData
07c94473502a4b595079894d97c358c4 *data/ButyrateProducers1.RData
559b634469df8de538b86def2a706cae *data/ButyrateProducers2.RData
3dc44b1ae71d9c060fe302491ea21d93 *data/ButyrateProducers3.RData
baa1f7fbd485f3cb3d36612c6f12d056 *data/LactateProducers.RData
0ccb7153d945e953891ae4f5060fbc07 *data/MFG.RData
362bf195fc5c09b3d1f8180cd4943c36 *data/Methanogens.RData
f96c9d2a9e8203b4cff310db9e739c02 *data/NoButyFibreDeg.RData
b85f0242f64ccf0f96ec907a30e6bfeb *data/NoButyStarchDeg.RData
2f8b2e08f15773a260ad84ec9ee6b218 *data/PropionateProducers.RData
f6684dd75b99ab91d9bc70447781a998 *data/Xaa.RData
fa938c00659ba56d0832af370d2856c6 *data/Xh2.RData
dc34c401f1038c5499420241ac1bf57e *data/Xsu.RData
9bf591a80a0ac1a08cf113960e59db32 *data/microbeSysInfoHuman.RData
aee1cbb40be8aa05081f3e668c2122f2 *data/microbeSysInfoRumen.RData
2d98c6560619dcaffc320714bfd9fb6d *data/resourceSysInfoHuman.RData
fce6cee349865b7351afd7374a328e0b *data/resourceSysInfoRumen.RData
3cda8018be743e2d40c2b8899e7ae461 *data/strainParams.RData
74af321ed3d7b21d8e0e09d7d057d3a3 *data/systemInfoMicrobesPhyto.RData
bc5a64fc19bc550f08e7a49b96f9e96e *data/systemInfoMicrobesVirus.RData
0fcc92860f2fc2b71c76161a1443d680 *data/systemInfoResourcesPhyto.RData
1252d43482ce33a4c598ce6249725891 *data/systemInfoResourcesVirus.RData
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9bcbbfd7718178e9c9b92b743a62620e *inst/DemoFiles/human2.R
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39f041cf47c0bd7a7f88ee4f4213c176 *inst/DemoFiles/phyto.R
4a7ad822227b1196489d31d3d181173d *inst/DemoFiles/rumen.R
cbdbc0339cb0f5ad131a93e62eb0a25c *inst/doc/microPop.pdf
061e5dc1fb215f823437ef698338d1b0 *inst/doc/microPop.pdf.asis
f6f971e7263e448bae3b6659f50d5f1a *inst/extdata/Acetogens.csv
52c6d59f06020cbf5a586c85fb09b32b *inst/extdata/Bacteroides.csv
929dad9f804d385df7fba41c377f1518 *inst/extdata/ButyrateProducers1.csv
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db7b10e491e2faa97fd6f84f5d12b731 *inst/extdata/LactateProducers.csv
26d493ec55c0902963b43a6b1bbfd2f4 *inst/extdata/MFG.csv
00786058a89692576cd5ebf174660878 *inst/extdata/Methanogens.csv
93c3988be372dcbd28bcc86ebf8b2114 *inst/extdata/NoButyFibreDeg.csv
c729143b56f4f8728755c3f44c2a0102 *inst/extdata/NoButyStarchDeg.csv
48b68f19f6f2168f8cd53e606b7c8551 *inst/extdata/PropionateProducers.csv
8a3a896c9759a641f148c9bc3d83c9ef *inst/extdata/Xaa.csv
8c315a06f6bcb053c5f0d76c5cccb82f *inst/extdata/Xh2.csv
a8584eb25c8e59c0387efd0a68281dc4 *inst/extdata/Xsu.csv
8c0500298443160d57a433fc7e0b3938 *inst/extdata/microbeSysInfo.csv
8c0500298443160d57a433fc7e0b3938 *inst/extdata/microbeSysInfoHuman.csv
1714a617e4e7a3b2a38e1f03620280f7 *inst/extdata/microbeSysInfoRumen.csv
44ceb5b359966d37115ecd09caad6877 *inst/extdata/resourceSysInfo.csv
1d4b12b2a97153ab07893f4b0e7e03fe *inst/extdata/resourceSysInfoHuman.csv
6a38e0b29fbdf3e3e147e14893526cb1 *inst/extdata/resourceSysInfoRumen.csv
7990ce6c46f5b8431bdf7a26fd1a1cbd *inst/extdata/strainParams.csv
ffae1f99aab6d4a2b05fc53e580095eb *inst/extdata/systemInfoMicrobesPhyto.csv
5e20079438830a00f55feb465afbfba1 *inst/extdata/systemInfoMicrobesVirus.csv
58cf47af993818b17ba48b38ca70f214 *inst/extdata/systemInfoResourcesPhyto.csv
cc96261ad78c4d4303fccf9fa6341edd *inst/extdata/systemInfoResourcesVirus.csv
6febcb0da1812fb05321e7e6ed729296 *man/Acetogens.Rd
4010653861d6ebb23be5cc409c4a2345 *man/Bacteroides.Rd
678d63bc07455d3fd13b46b69f25a4aa *man/ButyrateProducers1.Rd
842c345b5fe7c642449035d899d1e45f *man/ButyrateProducers2.Rd
4e2a54eb9aa8e5f4ff1744b4aba293e3 *man/ButyrateProducers3.Rd
c4998d45a65dec7585b2b57c8251c7c4 *man/LactateProducers.Rd
ca635bfaa0ce78e430381ede0d077141 *man/MFG.Rd
6020adafd5628e094e3a17a1c1552dec *man/Methanogens.Rd
5e69341668c2929672992f305341974c *man/NoButyFibreDeg.Rd
545ced38a0b5eb4cda4be512b5a08992 *man/NoButyStarchDeg.Rd
35a53910ba28552f0728b658425451d2 *man/PropionateProducers.Rd
e12bdccec4db2c5f9a4a92ec0b55740b *man/Xaa.Rd
ef35d34a368302570255601fd8e2431c *man/Xh2.Rd
0fc437de0867577b9bf475a10452ea7f *man/Xsu.Rd
a73adeaef7574e81d809b46cb21495bc *man/applyTraitTradeOffs.Rd
2fc97055424324c230be4db82783a6a0 *man/assignNAsToMFGs.Rd
c3183f72d88afe448f3e057ea2566e68 *man/assignStrainTraits.Rd
15848e34e9dde8fa02eb85c4c0626763 *man/checkResInfo.Rd
ca206cb06cdf30d8fbec09e205afbdd7 *man/checkSolution.Rd
b6ab45ee162d7e5195c8b4d6af54ba20 *man/checkStoichiom.Rd
278e23aff5193b019a3bf1e1e1d2eaf8 *man/combineGrowthLimFuncDefault.Rd
66686987c1f75dc4a0170a6a4fc745ba *man/combinePathsFuncDefault.Rd
c6fefba43deedc8353f313fb89e4ad45 *man/createDF.Rd
fb672766356083dd52184b60b9350af9 *man/derivsDefault.Rd
301e9bc710be08e27d90c6c33bcde8b8 *man/entryRateFuncDefault.Rd
1a9de6d036ba54fb30c741eff66de7a3 *man/extraGrowthLimFuncDefault.Rd
956dff4e9ee19277df3fdba4610ff9ac *man/getAllResources.Rd
65f129c00bd772bce5af53d114d16aa3 *man/getGroupName.Rd
4c48e86bc7e3d0913f7f86f46da7c338 *man/getKeyRes.Rd
aa0c7c49aebab9e87c3f0625ba39d1a6 *man/getNonBoostFrac.Rd
78c6718853fa5bf32acaa46071ec3dc5 *man/getNumPaths.Rd
539930dc8130bb6522c8e982f5d1a159 *man/getPHcorners.Rd
bdabc55bce5c6121deb56c4ebea85cc0 *man/getStrainPHcorners.Rd
7cadbb2c2f5652232a60f368d73c43d2 *man/getStrainParamsFromFile.Rd
35195b8c0dfaae0a64c804d5923749a8 *man/getValues.Rd
45c117a0029343d8fd2bb747e2dc6981 *man/growthLimFuncDefault.Rd
4d6b56d1124aa1c3683d842575580cc8 *man/makeInflowFromSoln.Rd
82db0285819ecdc719618b9e85d48fd3 *man/makeParamMatrixG.Rd
ca6e273ce50b2630f8e676e2975e4ee0 *man/makeParamMatrixS.Rd
226e2bdb564fefeeaf133ebd87fc8f65 *man/massBalanceFuncDefault.Rd
749a590d46428a7010454bb31a696018 *man/microPop-package.Rd
52c7885ccb00e66329fcb56f5bb08519 *man/microPopModel.Rd
4c2329af1238818a8b7a6531a3baf520 *man/microbeSysInfo.Rd
5da8c069c915178bbb6fe4372761459c *man/microbeSysInfoHuman.Rd
a6bd88d1c0b402f156dcefa7c09108bc *man/microbeSysInfoRumen.Rd
094dd55fd46692ec24a302ecd4b17cd4 *man/pHFuncDefault.Rd
3cef7cc4323c5ca63a3f8c02a2312f32 *man/pHLimFuncDefault.Rd
7f8efc0f8f7cd6b2d88c188f8a38bd09 *man/pHcentreOfMass.Rd
bf92b68260c71e49ae6b33569ce1397a *man/plotTraitChange.Rd
a048934ff04e4196ee40373eea01dd59 *man/productionFuncDefault.Rd
a5d46d18607f638c6a17a5519d55439b *man/quickPlot.Rd
e3ebb3e1a702babf4871f035d5715323 *man/rateFuncsDefault.Rd
e3be769a11556a52d62d69a0795a7048 *man/removalRateFuncDefault.Rd
2c37dc786ed3d269a5a35e442a1362a7 *man/replaceListItems.Rd
6b55ea0d32a19f954959a6e6b9f4ddd2 *man/resourceSysInfo.Rd
9978862951628b0f9f55850e1e67793c *man/resourceSysInfoHuman.Rd
36959f37165c434928716121ea173ac6 *man/resourceSysInfoRumen.Rd
9ee8221ca505cfc9a2b58e48314cfa83 *man/runMicroPopExample.Rd
bef5a3f4ac945643c773c6d69cf7bd42 *man/strainParams.Rd
2defd58d1f3cd389f7ea15ce0cab959a *man/subsetFunc.Rd
b66ef82d140b26411a815db19c64e25f *man/systemInfoMicrobesPhyto.Rd
39f0deb4978fa31b515223b41b10123c *man/systemInfoMicrobesVirus.Rd
61b2326e5a060fcde08c0d011446ea5e *man/systemInfoResourcesPhyto.Rd
4306343cb1526db6ede81a33032752bc *man/systemInfoResourcesVirus.Rd
36e8c8d860f8954d7f7c90b89ba495b4 *man/uptakeFuncDefault.Rd
118f64671291420b63f23b2a0ef105c1 *man/waterUptakeRatio.Rd
caa07d510e77a49528dbfed50f88d198 *tests/testthat.R
4dd0e011234f1a8982d093690749ac8e *tests/testthat/loadTestDataFunc.R
71d109f1734263dd544e01a0c869624f *tests/testthat/testsForModelRun0.R
035c97a09e95da4cfba9fd4584f1eb81 *tests/testthat/testsForModelRun1.R
a438e68c84f1b531b8227be4a4a5ddd0 *tests/testthat/testsForStrainFuncs.R
5553461311b60f8020470fbf530f86c2 *tests/testthat/testsWithNoModelRun.R
061e5dc1fb215f823437ef698338d1b0 *vignettes/microPop.pdf.asis
