d36f1f132d3f1964726e9bc6f8492f08 *DESCRIPTION
0c027d80118ab47f3f7c0c3ed3ece596 *NAMESPACE
3dd52ce52aaff0908b2d0b97b2ef7099 *NEWS.md
37186f6d3457948f235cb8ebf7169f8a *R/animals_score.R
a8c6109b2b1c4fc517c03b7551a9cafe *R/assign_topic.R
55a9a41c1882b7605fdf9da0300d0cf3 *R/biomarker_score.R
14471d786656befbf41272ece1f1bda0 *R/combine_mir.R
a9f9157d009983a97584c8a10e4ad629 *R/compare_mir_count.R
896d869847b723e5b5492a29e96b7ed9 *R/compare_mir_terms.R
3c8dae28a23edd3e0f38e5a82f04fb27 *R/count_mir_perc_total_threshold_helper.R
6cc0202527ecde497cd2d4f29251953b *R/count_mir_single_topic.R
334f4e2ed36f8d4e98b4b5a8f83358af *R/count_mir_threshold.R
f4239df161ff056d95dbc001ee8c68d9 *R/detect_single_term.R
e669fac076336e6b0ff5c7d810bc59ad *R/df_crc.R
20c176ec87dbf94eb61525e191ecfba8 *R/df_mirtarbase.R
c22c04f784697d494fa5b9ec751c593f *R/df_operations_combine_addtopic_subsetmir.R
85616f5ff3076af4e99391eb6d16875c *R/df_panc.R
cbba37173f9c83ee8e3f9e894cade0f0 *R/df_test.R
8713198cde79281f15d58b7095097b96 *R/distinct_shared_mir.R
fc5ac6b1847851c92b55f0fdbe38a4ea *R/extract_mir.R
a15a507a4ccfab1b78f17619cd62a9cd *R/generate_stopwords.R
94f76d2a8674644f5d118512f5732b76 *R/get_mir_vec.R
4dfe2ed5fcc94ec93e58b278ffebd42d *R/get_pmid.R
58b3c49e7e9de3bb82a47c3428e424d2 *R/globals.R
552c41fc7d9f6135597f059ba69f9cd0 *R/helper_calculate_score.R
9316051b02e3e45d9c409664a16c4571 *R/helper_control_shared_mir.R
9024820ebdfd5e76f36af79c74123fa1 *R/join_mirtarbase.R
ff4d50f19922f27984904717b5c9fba8 *R/join_targets.R
6e518d3742ac8c8d7f6992d3062b0d6a *R/lda_miretrieve.R
c8d691641e233ec185ef4ab87ad37db7 *R/load_and_save_files.R
d12a3109511435b36656e9d63aa96b83 *R/mirna_year_new_and_trend.R
9c2d4a7f8e625a399a8a34ea73d4389a *R/patients_score.R
52e1dd447ce37f6f75b7391d66ed5eb0 *R/polymorphism.R
9173150f25959c6971633b2b6ae7b719 *R/prepare_make_dtm_helper.R
566a06c36f66ea8f57164b4b2d1f0198 *R/pretty_breaks_helper.R
6254ab9714b18791adabc07e1401880b *R/self_made_topics.R
c9585598e0d423185b093af0271184f5 *R/stopwords_doc.R
02615ed5efdf336fa2a646b3217913d6 *R/stopwords_ngram_roxygen.R
4a0cb847b6bd2c8b2c9a2351a0da95a2 *R/subset_articles_review_year.R
a60f2de95febba67ba46eeaef022ca3a *R/subset_mir.R
20d6e8b3474bd4a2896b153d0feb4467 *R/target_mirna.R
7985cf6e60eedd24c9b94c2fe1cce682 *R/tfidf_words.R
8965ff8d306f3235f767ef1a53bbf233 *R/top_words_count_words_helper.R
52d7c164e9c32f0a95872cf999c45607 *R/wordcloud.R
d87b8ae8ac8503d5249866202afc4a6a *README.md
d463630aaef323f1addea975002971c3 *data/df_crc.rda
aba72cd892a953e6e7312fb52522be57 *data/df_mirtarbase.rda
7581dc024dff071da0463d736cc7baed *data/df_panc.rda
72d0f87a6067768fab264497fc5aa239 *data/df_test.rda
e316751fd913baab4db10b9fc101f75f *data/ngram_stopwords.rda
c0f54d6fc0652328946a98ce59aa5253 *data/stopwords_2gram.rda
bd24c4a45351ffe4683bfea44adc82bb *data/stopwords_miretrieve.rda
36f71b9fb7934726d99cb239b82b5976 *data/stopwords_pubmed.rda
dd79579393280962ee43914cdcc60ce0 *man/add_col_topic.Rd
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5049bbd2b3f0e9106f84820f091c9ab7 *man/assign_topic.Rd
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62033fbf9a41e4252f88e4f7ce10abad *man/biomarker_keywords.Rd
592c1ed9e99be7747732f126e866e7a1 *man/calculate_score_animals.Rd
8a6bf45cdf0fcec194a141d76bfbb749 *man/calculate_score_biomarker.Rd
0039e261016dffea324e219d76369bec *man/calculate_score_patients.Rd
85d0f37e43b1dc155a9eab6ab0f1ffcc *man/calculate_score_topic.Rd
520ef27680e2d24ba5917459710fb6f6 *man/combine_df.Rd
3810514c9e42d75e4b325860e6dd0fcf *man/combine_mir.Rd
27d742c007d97a0ed3f4374c9a8c5ad3 *man/combine_stopwords.Rd
4b331f3d93ed21221a0a23fcd73edbd5 *man/compare_mir_count.Rd
7eb8543e6b98f5e5d92e3cb5f7ce5797 *man/compare_mir_count_log2.Rd
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aee2160694f5c8c5c1d0043035bf3464 *man/count_snp.Rd
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03dd98acf4a112e97fbd94819392e6cd *man/df_crc.Rd
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1fef99bc7e5d7952047d39055ccc015e *man/extract_snp.Rd
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8439a38d94339421a55b5998badc25ae *man/generate_stopwords.Rd
0a4383987cb1244dbac8934d88426ccc *man/get_distinct_mir_df.Rd
e79c0a4c78899b19667e8949a700ac6f *man/get_distinct_mir_vec.Rd
9793eb4dff1d8923b5a68d1ad773642f *man/get_mir.Rd
47f57dc3e4ddad28d9946e9c0bf0be34 *man/get_pmid.Rd
ab5a0bd50ac4bc005cbb9f754a411884 *man/get_shared_mir_df.Rd
e7942aaf42907dfe9e40c9a74c4cb306 *man/get_shared_mir_vec.Rd
78b8316846bdbdc9a1b66bff319fed7c *man/get_snp.Rd
17aeb3ccaaf9065d706dc1a7fb045fa2 *man/indicate_mir.Rd
fdc12b842eb2d48e5882a79de2c1659f *man/indicate_term.Rd
2d19060ce077e413162ed31361c02866 *man/join_mirtarbase.Rd
dae077620db6e1c77a93281463a7f0d5 *man/join_targets.Rd
febba2aae0c976a554a79f7a86f02920 *man/ngram_stopwords.Rd
c7eb64ea0234dd09c531c5e0343ff484 *man/patients_keywords.Rd
f40a38f02ad67fdb68e6387721b2e0f4 *man/plot_lda_term.Rd
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12de09c6f7498916e372faddd4b6f267 *man/plot_mir_count_threshold.Rd
c06c40be88ce9dc3fc1dbca89ff2280b *man/plot_mir_development.Rd
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d5d4e1141146b1a48a680ebacf455f84 *man/plot_perplexity.Rd
008f1cbba99549f711aaa2d6818f16bf *man/plot_score_animals.Rd
bf46fe135c0f22e660fd27841cfdac2f *man/plot_score_biomarker.Rd
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5c7c047589613707398ae41b9cd49da9 *man/plot_score_topic.Rd
467e643e5a86236738532b529ac51333 *man/plot_target_count.Rd
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175d5ed0ffe0048ff044d0e0a37ecda3 *man/read_pubmed.Rd
83023ece282d4cbc97d3ea269df80fd7 *man/read_pubmed_jats.Rd
1227fc047c20c44e5f6fbc57d7ec2382 *man/save_excel.Rd
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22672ede9079b1bfc0c98791e9d71c9a *man/stopwords_2gram.Rd
59f6995668a5a446c7ead33316e672fa *man/stopwords_miretrieve.Rd
36d17e9ca812e05ad9e766e790c23e47 *man/stopwords_pubmed.Rd
a45376746d5c0d46319aca3685611180 *man/subset_df.Rd
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2419abb34074271571d0fb8b5d8144a8 *man/subset_snp.Rd
11f2fc780edc54cac80091e9e8c1aa08 *man/subset_year.Rd
8d4e09abbdd94d95529edbb4d7e4a32c *tests/testthat.R
5796b2c632106b172cb2068f1eefa904 *tests/testthat/excel_target_test.xlsx
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5ced0b0fa4c00f278a163af501a4c6d8 *tests/testthat/test-calculatescore.R
728552930473e327c70f953a46dc4a6e *tests/testthat/test-combinedf.R
06211dbcf03a8f2129eb2b62bd0c86c2 *tests/testthat/test-combinemir.R
fcb1865039ecba8fdeb79428441456cd *tests/testthat/test-comparemircount.R
36a7ea34420133adac2713782e8a29b0 *tests/testthat/test-comparemirterms.R
7a91b4c0bb019c1dc786b13c5b2a32ed *tests/testthat/test-countmir.R
3d4cd79a9cfd10c1f4de4c8770a8bc25 *tests/testthat/test-counttarget.R
d27ab416749a0b4816ced654fd78015c *tests/testthat/test-fitlda.R
12aec71d11318eae16a9a28628c896fe *tests/testthat/test-getmir.R
578bfd35c70442dd68419cbb57ff057b *tests/testthat/test-getmirdf.R
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dc698670d6dc61d97448fd0623caad81 *tests/testthat/test-joinmirtarbase.R
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67bbcd8ca82c8f70477b24a742c2f477 *tests/testthat/test-plotmirdevyear.R
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5f511a1f0c4c19b4c01c2a06c1224ab5 *tests/testthat/test_subsetdf.R
d64bb3c4c9dad4bfb8b334e8e35e25ee *tests/testthat/test_subsetyear.R
