Package: lilikoi
Type: Package
Title: Metabolomics Personalized Pathway Analysis Tool
Version: 2.0.2
Authors@R: c(
 person("Xinying", "Fang", email = "xinyingf@umich.edu", role = c("aut")),
 person("Yu", "Liu", email = "uiluy@umich.edu", role = "aut"),
 person("Zhijie", "Ren", email = "rzj@umich.edu", role = "aut"),
 person("Fadhl", "Alakwaa", email = "falakwaa@hawaii.edu", role = "aut"),
 person("Sijia", "Huang", email = "scarlettcanny@gmail.com", role = "aut"),
 person("Lana", "Garmire", email = "lgarmire@med.umich.edu", role = c("aut","cre")))
Description: A personalized metabolites and pathway analysis tool. With the metabolites data provided by users, lilikoi maps the metabolites data into pathways and calculates pathway deregulation scores. It enables users to perform exploratory analysis, classification and prognosis analysis on both metabolites and pathways. References: Fadhl M AlAkwaa, Breck Yunits, Sijia Huang, Hassam Alhajaji, Lana X Garmire <doi.org/10.1093/gigascience/giy136> H. Paul Benton <http://www.metabolomics-forum.com/index.php?topic=281.0> Jeff Xia <https://github.com/cangfengzhe/Metabo/blob/master/MetaboAnalyst/website/name_match.R> Travers Ching, Xun Zhu, Lana X. Garmire (2018) <doi:10.1371/journal.pcbi.1006076>.
Depends: R (>= 3.5.0)
Imports: car, caret, dplyr, gbm, ggplot2, glmnet, h2o, impute,
        infotheo, limma, M3C, Metrics, MLmetrics, parallel, pathifier,
        pathview, plyr, preprocessCore, pROC, RCy3, reticulate,
        reshape, RWeka, scales, stats, stringr, survminer, survival
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
VignetteBuilder: knitr
Suggests: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2020-10-02 23:01:30 UTC; rrrrrita
Author: Xinying Fang [aut],
  Yu Liu [aut],
  Zhijie Ren [aut],
  Fadhl Alakwaa [aut],
  Sijia Huang [aut],
  Lana Garmire [aut, cre]
Maintainer: Lana Garmire <lgarmire@med.umich.edu>
Repository: CRAN
Date/Publication: 2020-10-03 05:30:05 UTC
