export(calculateJsfs)
exportClasses(Jaatha)
export(dm.addGrowth)
export(dm.addMigration)
export(dm.addMutation)
export(dm.addMutationRateHeterogenity)
export(dm.addOutgroup)
export(dm.addParameter)
export(dm.addRecombination)
export(dm.addSizeChange)
export(dm.addSpeciationEvent)
export(dm.addSymmetricMigration)
export(dm.createDemographicModel)
export(dm.createThetaTauModel)
export(dm.setMutationModel)
export(dm.simSumStats)
export(Jaatha.getLikelihoods)
export(Jaatha.getStartingPoints)
export(Jaatha.initialize)
export(Jaatha.initialSearch)
export(Jaatha.refinedSearch)
export(Jaatha.setSeqgenExecutable)
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(foreach,registerDoSEQ)
importFrom(methods,new)
importFrom(methods,representation)
importFrom(phyclust,ms)
import(Rcpp)
useDynLib(jaatha)
