06d887ee180ef6031eca49d7a3ea70c6 *DESCRIPTION
8100e3b6c66db806ed93592d539b7d9b *NAMESPACE
57b56eb57d347ca77ee6e1622cb01bed *NEWS.md
d0df9e0c7efc21c690aec0104e32e079 *R/addAttributesDfChrSize.R
3b14f6d16e4494dbb80ddd32af1124b4 *R/armRatioCI.R
c903319cd7d659d26d5ee0aa4e90a13c *R/arrowPlotMark.R
a2473b770004c5d94df99dc6082bc2b8 *R/asymmetry.R
c80c9679124b3b83f9221b4acd2c926b *R/cMPlotMark.R
039f871b3cb325706554ba287b1bd18b *R/checkArmHolocenError.R
e474bbe357f4bd327ac98798224cf50b *R/checkNameChrDfMarks.R
7faced24afd8864cd3b56ff8d6b36c47 *R/chrbasicdataHolo.R
f10cf8448292c902b4a0980c31bccd14 *R/chrbasicdatamono.R
448c73542c9bd50cdbd64a46759a45e9 *R/customCeiling.R
c6888ae11d1e68e24067a28707858587 *R/dfMarkStyle.R
77cc7a1080cf5a6b8df9d53669d48be2 *R/dfToListColumn.R
6cf12039d27d388653420af4e11f944f *R/filterExtraOTU.R
e309897aa0536a4dc35c63715b21600b *R/fixChrNameDupDF.R
47e6f99a30e94f2ac3309b4e0b7a47d5 *R/genBankReadIF.R
ac161fa8bac5d19beb88fe5bd21b1fd9 *R/idiogramFISH-package.R
69b1e99e8a499c00313a9811b3617612 *R/idiogramFISH.R
7752849119ea90f376b27d581399f4bc *R/insertInList.R
e1d164ef5b6fb54db9661ea823ecd62e *R/makeNumCols.R
1b5960cc8ee0a007e6bce96dd3954618 *R/makeVectorNames.R
4e76c12b82ab34557de926529992b346 *R/makedfMarkColor.R
c7bcd043ed3a5abb32e869345243140f *R/makedfMarkColorMycolors.R
5c1ae972aa053a4668f0a64535ecd810 *R/mapXY.R
4beb7a396f8e90d2de914a9877b2b8f2 *R/mapXYCen.R
b9deb221707352395ac31203eaecaf74 *R/markDistCenGISHfix.R
7db8d21abb34bf3d4cca0af20c24868f *R/markdataholo.R
16e932de4b5fb49eff6a735abf730261 *R/markposDFs.R
dadaa354b1736649df275205afddba31 *R/mimicCenPlotMark.R
f2cbfec634c80fc2e83c95028a19f048 *R/namesToColumns.R
1554a46ac9cf16a657e8f301f4ca265f *R/newOrderColumn.R
90dc5374c13a1a67b572d6628d661b9f *R/onAttach.R
256aca4bd95525965ccf36683341d168 *R/orientation.R
8c86702f3922a2d7d1c863c379c1eb0b *R/plotDotMarks.R
a98a1eec838aed883d33edb9273bde02 *R/plotIdiograms.R
1f4b03ae95081278ecb48b688b81b912 *R/plotlabelsright.R
84c93c130e62b8ae4d5428450b24bfc4 *R/removeNAFromList.R
1aa5115d6e69223c78b5c06250645596 *R/robert.R
fa7e99e24edee460f776817b92618f58 *R/roundPlotMark.R
996f264083c3d1538c63c4e636908ba4 *R/rulerPlot.R
5cf5a75e7f58de6d3760d3d0f1791cd9 *R/rulerTitle.R
a0e0de00d94ebf6d362031bdd9e0fd4d *R/textLabel.R
786b7237995fd58d74f3325554200adc *R/textLabelDots.R
d4764ab27285c76ebcdc0786f167d2a7 *README.md
374993119619391268e6aa319e39addd *build/vignette.rds
6aaa5a517e59835f4a529b9740da3e4e *data/allChrSizeSample.rda
a8476370f8e0b89c790692bdc15b0d47 *data/allMarksSample.rda
bb0dacf24636896be96528176e905a87 *data/bigdfChrSizeHolo.rda
04dbc73d81df3c5d96aedcd4339903bd *data/bigdfMarkPosHolo.rda
7f0109188eaf596c937b5922a8729f49 *data/bigdfOfChrSize.rda
234f3fe679957bd622037d131e495b92 *data/bigdfOfChrSize3Mb.rda
077fe2885c68bd516b70e9239a7f11ea *data/bigdfOfMarks.rda
2b8cec62e429fc69146cccfefda099c1 *data/bigdfOfMarks3Mb.rda
7a1282eb7401aed81496b487323eb97f *data/dfAlloParentMarks.rda
c98f856af085e7b31aecf9b5a7db574f *data/dfAlloParentMarksHolo.rda
f2ab13d8dfa283ca0fedb9e6646e9548 *data/dfChrSizeHolo.rda
e24b10c93f437fe622519b7cdafa5c6e *data/dfMarkColor.rda
8245b89626b5606f7bd341e4da6e41c5 *data/dfMarkPosHolo.rda
3978b56008f75e050ba908780ed81ac9 *data/dfOfChrSize.rda
e3a0aaf0fef61e1f0696de5512bd8298 *data/dfOfMarks.rda
c74d5c3244b5f21c672c7853461c86f4 *data/dfOfMarks2.rda
eef18f06a38f544857cebed9c72a7c40 *data/humChr.rda
b1b956b49bcb01a10b902f2110ae481f *data/humMarkColor.rda
92011b2040badf9055691f5979c5fc2b *data/humMarkPos.rda
757734a574d853d1616beec8b1734548 *data/mydfMaColor.rda
077449d5bffe01171e8ddbfe1b4d3f42 *data/parentalAndHybChrSize.rda
c7c0fd07c05a5f5851074985c0b03a7b *data/parentalAndHybHoloChrSize.rda
38928282cfeffc9b34d230f6576bc079 *data/traspaMarks.rda
50138cb9c2d88681af1a6208ea880434 *data/traspadf.rda
1dcd00851891d71633348e89d772a7ad *inst/CITATION
ffddb7d87fffa1c0eeb0ae05a5c4f1d9 *inst/doc/AplotIdiogramsVig.R
50fb92f07946528f36fdf5b53eafc9f9 *inst/doc/AplotIdiogramsVig.Rmd
67e81ce7c48526807cc97249b0d29826 *inst/doc/AplotIdiogramsVig.html
276758cab7c7adb52d915f083067a401 *inst/doc/BcircularVig.R
f427ff8dfb28caa7aba84ba93c93a4fe *inst/doc/BcircularVig.Rmd
5573c057c92c6decf649e8dfb7788bc1 *inst/doc/BcircularVig.html
82aac374e7a539e645cc2b59544e5163 *inst/doc/DphylogenyVig.R
d8d83bfed12df62c4a1eabfd7eb609ef *inst/doc/DphylogenyVig.Rmd
a66f23b5a293a60ca966cca1a06f27f0 *inst/doc/DphylogenyVig.html
13b7fffeac446bd4083ea88c49af9926 *inst/doc/EhumanVig.R
6437f64e61bb269deec66d80ef5b8766 *inst/doc/EhumanVig.Rmd
95ae372630794d58a4d8d68d1205cfd9 *inst/doc/EhumanVig.html
0e47e54de6c78dc72899eda875a5cca4 *inst/doc/index.R
02238c8b901c0b821c41c85431ba0d39 *inst/doc/index.Rmd
7a3b1661465c2ed295dd421466e65178 *inst/doc/index.html
db87f2cc4b212347e9cb752386451bb2 *inst/extdata/eightSpIqtree.treefile
8ca2b95b66ee4ec04af4c73445317112 *inst/extdata/revBayesTutorial.tree
aa3716a8e57404a68d6e8249d7df8b8e *man/addAttributesDfChrSize.Rd
a34a092fcd48437a146ed861ccc1b6c3 *man/armRatioCI.Rd
6bace3090d038a08dc359d2a951c990a *man/arrowPlotMark.Rd
2581ea3880b3764ad1b5dccfe1950310 *man/asymmetry.Rd
aa7441b4e6b806bb247f7ed155b29c6c *man/cMPlotMark.Rd
7d7a67e7a8b508098418ed4c36e6c2eb *man/checkArmHolocenError.Rd
58dfe80a87150337834001e385088b8e *man/checkNameChrDfMarks.Rd
b068e312d0075561f4820c1b438cbb94 *man/chrbasicdataHolo.Rd
108ddb98496d9ef9017ca2da987b6140 *man/chrbasicdatamono.Rd
02e6845a0775c9ea8f8465865d1612da *man/customCeiling.Rd
827a6df10c1bc5dba31dc0efa7705831 *man/dfMarkStyle.Rd
65a287b19b81e45f922670792385e271 *man/dfToListColumn.Rd
aad1fe47181854ff115b9d5d8fdefba0 *man/figures/NEWS.svg
0c574dc5cae00b2eb36e5309bf72994c *man/figures/README-example-1.png
c7d0b056ac4ad5c71cbd9f9bc0e2c731 *man/figures/README-example2-1.png
9a1cf109547e3cc3799c469bef74566f *man/figures/README-unnamed-chunk-16-1.png
4b87e4a55c83c61c62269381436dc449 *man/figures/README-unnamed-chunk-17-1.png
4b87e4a55c83c61c62269381436dc449 *man/figures/README-unnamed-chunk-18-1.png
44cda481e3e7673d3ff77f8e0c2d529e *man/figures/crandownload.svg
6eaf87611a0cb2aa6a7e18e6500bc6c0 *man/figures/cranmanualbookdown.svg
12e831706a222f56b6ee7b76d4e43064 *man/figures/cranversion.svg
1c345c65f7ed3eae36039de879bd4083 *man/figures/develmanualpkgdown.svg
4fe2d1c4d91eba2ccd14aa68d12d8f3f *man/figures/develmanualvignette.svg
11bbf49c599980a93823c65d41c8f4cc *man/figures/doibadge.svg
445794882aa890c1512a1b825ef96ebd *man/figures/donate2.svg
cc0d118a4204fd7e2757ef1e0bb3b4ea *man/figures/donateweek.svg
e4da1a72588010d1634600fb4d657ca0 *man/figures/firstplot2.png
1a267be5c6dfb2ab60f3301863354332 *man/figures/gitbadge.svg
bdfd8d4d0cbe48864a9104679627297d *man/figures/logo.png
44f66e34e6dec00ad02b1899473d69e2 *man/figures/manual.svg
1e350aec9fe0e95bcf4c85cbb5ec8d8c *man/figures/nostoc.jpg
3c2ccde46d72e76e88f7e5d0079f8d06 *man/figures/nostocSmall.jpg
1c345c65f7ed3eae36039de879bd4083 *man/figures/pkgdownver.svg
2e4ef30d71fd8cac6dc7e185717c572e *man/figures/readme.svg
05e63f89352c2add7a3df79178d4487a *man/figures/realdownloads.svg
3e708309bc203ab0124db9008a19146c *man/figures/secondplot2.png
4445b4a3abc767eaab8f2bd5ecac2210 *man/figures/thirdplot2.png
435e702983d5a58e68134ecb87b765bc *man/filterExtraOTU.Rd
40b5821229f14cc389aa1cd97f9a2e8b *man/fixChrNameDupDF.Rd
cb3285800315ef71c6362cb68602cf5c *man/genBankReadIF.Rd
5129e2439828422a71a6c33fbd7f523a *man/idiogramFISH-package.Rd
1d08b7bdaa2f1d8b0e946be36079a0b8 *man/insertInList.Rd
dd09c802e06577e1c53853c958cf9c8e *man/makeNumCols.Rd
787d4c49bbf29e4a11b6143cded84b4f *man/makeVectorNames.Rd
2fd9900cff49c73f98c04ebd71136fbb *man/makedfMarkColor.Rd
94da15e8ccf75a1c352a5e2978164a68 *man/makedfMarkColorMycolors.Rd
6916516d89b8860182f10ce495b0c9ba *man/mapXY.Rd
ea5e74846724522930d83ff03fc02fe0 *man/mapXYCen.Rd
273e86dfcca59a76fbdb75cd187f37b3 *man/markDistCenGISHfix.Rd
5acd55d3c42180897d5ba59aaafd0b3e *man/markdataholo.Rd
54dfdc045b169ce2fa6be73a7d88b47e *man/markposDFs.Rd
85ee27ca62de88d7923375c1b5ba1c7b *man/mimicCenPlotMark.Rd
df13ce1b8c430f8f6bd6817806c06b3e *man/namesToColumns.Rd
9c7a3f141727e08ea0441838e2d3e47b *man/newOrderColumn.Rd
e9730218644ee7da134724ebc0deef8c *man/plotDotMarks.Rd
b2222ee453822fc187142959c276750d *man/plotIdiograms.Rd
362e1d70aaad351f5d78eefc5d4d5d06 *man/plotlabelsright.Rd
97a1c851a02e8846aa5df03547366da4 *man/removeNAFromList.Rd
d90c2379063f9124b5790ac9c42a04dc *man/robert.Rd
45396b43b8bab5295697d14b4524a23f *man/roundPlotMark.Rd
dd7c273f47f6514eace3b4066c163b63 *man/rulerPlot.Rd
233e46219807dcbceeb60ace4d937f95 *man/rulerTitle.Rd
269f5600f92b8beb243055940f68b903 *man/textLabel.Rd
2ec64f56f4ee39154d78e7865dd81d2f *man/textLabelDots.Rd
78dfa3f3e40e7a763bfc1c63a986f129 *man/yVertoHor.Rd
50fb92f07946528f36fdf5b53eafc9f9 *vignettes/AplotIdiogramsVig.Rmd
f427ff8dfb28caa7aba84ba93c93a4fe *vignettes/BcircularVig.Rmd
d8d83bfed12df62c4a1eabfd7eb609ef *vignettes/DphylogenyVig.Rmd
6437f64e61bb269deec66d80ef5b8766 *vignettes/EhumanVig.Rmd
a035bfed244d4e33c64511add2ae53d8 *vignettes/css/all.minMod.css
d42e0d3494e81b0ec735dd2ee550a733 *vignettes/css/bootstrap.minO.css
94bffc699727b4bf4e192af7761d2a10 *vignettes/css/fonts/fa-regular-400.eot
caedfe4b2a045556ed2220d8760188e0 *vignettes/css/fonts/fa-regular-400.svg
0f5e4649570afea817a44d35f5da6eb9 *vignettes/css/fonts/fa-regular-400.ttf
f8d2c8af102e78367083b607ca0b1ba5 *vignettes/css/fonts/fa-regular-400.woff
29e936ad46496dd55a73a56cf29e9a4f *vignettes/css/fonts/fa-regular-400.woff2
cd6e323911f74e9a6d2858b437508935 *vignettes/css/mystyle.css
bf80a92abfcf940045b516a60085c88f *vignettes/dfOfChrSize.png
02238c8b901c0b821c41c85431ba0d39 *vignettes/index.Rmd
5d4d5bc687e6c4ba1b757b39e9054caa *vignettes/js/bootstrap.min.js
adb85a002f431f957e98e44886296619 *vignettes/js/clipboard.min.js
55dbfc63f1d63282e448caf03eec6f27 *vignettes/js/jquery.min.js
ce4fb17bdf055c7ebda02d20ac19fe58 *vignettes/js/pkgdown2.js
26fac8772637a3f692173b0a500d0b58 *vignettes/refs/Rrefs.bib
d03a42844fb7b6f3ccb39ac30d6ef3d1 *vignettes/refs/allrefs.bib
b2037e99a49e911c27be6b62137162d0 *vignettes/refs/clima5.csl
374b9a219424ad8a99dc33bbec831f5d *vignettes/refs/docPackages.bib
c749fca4ac05ad365c2d6872b774122b *vignettes/refs/docPackages2.bib
61b4703cccf112647f1bfabf475d8a79 *vignettes/refs/idiogramFISH.bib
e73636cd0db54d2df60e80c722e7137b *vignettes/refs/iqtree.bib
a824f1a7c13dec4afe47e0eb21c01a59 *vignettes/refs/multiple-bibliographies.lua
833ea43cee79c2fb29999f159ad6b603 *vignettes/refs/packages.bib
4c8c9254b51b4def263814080fd42845 *vignettes/refs/packages2.bib
9988cfe901624a538861630d56b999b3 *vignettes/refs/revbayes.bib
