52da1883050caab072f42af6ff215785 *DESCRIPTION
8064d9767a9fcb2e04ad99c0e2084470 *NAMESPACE
7a6a53e23d3e9b26395debf29aa7967c *R/SubpathwayGM.R
44e6236e0116bc8d329a1b3de9d8c317 *R/annotation.R
a06b944e37e0a2f30ab46ad4ccb97993 *R/combindedNetwork.R
c590e4b67e1b25c8b1e2e06095fd658b *R/go2go.R
07c66bcaab41376b8bf1ebaa8fb45e8a *R/initialize.R
8f087f528ad1e8051d42508b70525f0a *R/k-clique.R
854cc4919ef04df9ecc3cab0eb5334da *R/metabolic.R
881ae95b4ef033861c35e7e4f3685f5f *R/metabolic_non-metabolic.R
b464637fc9d04ccdc1167ac784f66104 *R/non-metabolic.R
1ad9df787536d19d2ea09b9d9326a458 *R/pathway.R
3e666a6b2695fd7c4028ab2c143e590d *R/sample.R
e031ba3e055042bda593933ca667aac7 *R/topologicalanalysis.R
e72f9fef4e632dfbc324e60d1d1acc16 *R/visualize.R
ff7fa90d14b487bcab5185db77b8d2fc *data/datalist
a29698ee54a488641d624d3eebcbee26 *data/hsa_ncbi-geneid_k2ri.rda
bad2c45792419df7889e007bdf405f8a *inst/doc/iSubpathwayMiner.Rnw
b5bbe8a6ff471f9ce9395ea8e33e2f54 *inst/doc/iSubpathwayMiner.pdf
930a44e7755249d1fa91338d369e2617 *inst/localdata/crc_diff_gene.txt
d986e69f210bd50f186ec04201b263bb *inst/localdata/crc_diff_metabolite.txt
b0a6bc43e56d77ff323125396b4ed38f *inst/localdata/kgml/metabolic/ec/ec00010.xml
7bd814e8cc5add70c022b498f6d8d248 *inst/localdata/kgml/metabolic/ec/ec00020.xml
b6a5adc11444267a91cd08bd357bb33f *inst/localdata/kgml/metabolic/ko/ko00010.xml
133e6cbca6fa58a7174b4d0f184afc2e *inst/localdata/kgml/metabolic/ko/ko00020.xml
7f8900b92b22bf04a4cf2c18f2355728 *inst/localdata/kgml/non-metabolic/ko/ko04010.xml
abd25c1685de4b01b488b4706a12db3a *inst/localdata/kgml/non-metabolic/ko/ko04140.xml
9a2c42e0fe007fcb72571ee1459fc976 *inst/localdata/kgml/non-metabolic/ko/ko04330.xml
8d787716b68fefbeb1ed0349ca1e01c9 *inst/localdata/kgml/readme.txt
b4e41b11944a46896e9695fd24a7e9f7 *inst/localdata/ligand_update.lst
bc992f447334375e6088c9fd1cc92057 *inst/localdata/sce/s.cerevisiae.pos
3cbd4db42c9bbac669aa09d868e56623 *inst/localdata/sce/sce_enzyme.list
f268acc3e328879430600124a5547370 *inst/localdata/sce/sce_ko.list
f515d78dc66dce7a8bb2399dc6f6bc36 *inst/localdata/sce/sce_ncbi-geneid.list
b589efce04ca0868cd9422cba446fcf2 *inst/localdata/sce/sce_pathway.list
e7ed7cb0527a01b81b313780389d8f95 *inst/localdata/sce/sce_sgd-sce.list
decfb78c0027e50eeacd7673eec973e4 *inst/localdata/taxonomy
6593669be9ad0c5f6399982fc21cf71e *man/SubpathwayGM.Rd
c8f57a8c1c0ffe7e850bbdf30c6c098f *man/aaa-iSubpathwayMiner-package.Rd
3b82d2cdb1c688c2c2c761472f829acb *man/expandNode.Rd
501c15a5e524822ad14650797722333a *man/filterNode.Rd
63c9581c79bc9215e16e354fa73087da *man/getBackground.Rd
e87efdbb7ddccaaad75aed96bbe9a5aa *man/getCombinedNetwork.Rd
8f36efa3ebea1ce4af05c22de6f46096 *man/getExample.Rd
0ec4e2629daee24361e30205a869f78d *man/getKcSubiGraph.Rd
cdf395b214b8269d55f718085c8841ed *man/getLocSubGraph.Rd
ec85ea715e17f71ae48a768650de0b99 *man/getMetabolicGraph.Rd
3fbb41bcfca07a0d7c3107b4ebbe56e0 *man/getNodeLabel.Rd
21ba7f416b38fd058e0c0bcfce3d09fe *man/getNonMetabolicGraph.Rd
2f3547e90d47aacd417b74368881320a *man/getOrgAndIdType.Rd
797c57d1cebeb69c412b7d2cd94a2c50 *man/getPathway.Rd
7aa4312f7c205c756a88fb1494440684 *man/getPrioBackground.Rd
991881620bd5df5deb96af990ceba4ef *man/getSimpleGraph.Rd
39a1532957efcfd5578122e7f8601674 *man/getUGraph.Rd
460b9e375380bec2bdcae61369d7a43a *man/go2go.Rd
80a6c799155ae0e85121b0a46671dbaf *man/iSubpathwayMiner-internal.Rd
795c0127a79e4cbb813ff15fe3ddfab9 *man/identifyGraph.Rd
68ea9f495ccc11b47f523407d0fb51e5 *man/identifyTopo.Rd
c976d6258e4ab41df002d715cf9bd505 *man/initializeK2ri.Rd
bfdec9dfac5a04eccf7a96736bb87457 *man/k2ri.Rd
8bc13010de937bdbccd6b97f7fcb72bd *man/k2riEnvironment.Rd
d6b09d1591ec72a94d73c9ab1596f4e4 *man/mapNode.Rd
f39feee1564f292884a9be8d412f4664 *man/mergeNode.Rd
a925eb2123653dedc3502827296dbe9c *man/plotAnnGraph.Rd
f2de8f07c896bde613c4c5c8aed2fd97 *man/plotGraph.Rd
f9fc7cc7fe7543304dadf413ca75ae75 *man/printGraph.Rd
1232ee821f5fc4d609f2d23578f64ec1 *man/printTopo.Rd
20f6372dc7aa787e5ad4d702ad4981ea *man/sampleMolecule.Rd
f0849f6ce0390345167e4137e7e02d43 *man/simplifyGraph.Rd
4a5b7d4440f9efc13e50d5a2b184472d *man/updateCompound.Rd
151a7310799aaa8efb060ab4ea6a620b *man/updateOrgAndIdType.Rd
4f2c29980b1d5d2b02dd39de44844437 *man/updatePathway.Rd
edf16e1861dc2028286e91d299a37170 *man/updateTaxonomy.Rd
bad2c45792419df7889e007bdf405f8a *vignettes/iSubpathwayMiner.Rnw
