35ce04721d26e4b97357678afcfa5fc5 *DESCRIPTION
8064d9767a9fcb2e04ad99c0e2084470 *NAMESPACE
947b8139081d46b02fe48f41ac43378f *R/annotation.R
a06b944e37e0a2f30ab46ad4ccb97993 *R/combindedNetwork.R
c590e4b67e1b25c8b1e2e06095fd658b *R/go2go.R
1b1a6af45cb72c84b88b6d97c7fefa3f *R/initialize.R
854cc4919ef04df9ecc3cab0eb5334da *R/metabolic.R
f3ac01ea6c221ec2f9899a7269707b9e *R/metabolic_non-metabolic.R
b464637fc9d04ccdc1167ac784f66104 *R/non-metabolic.R
1ad9df787536d19d2ea09b9d9326a458 *R/pathway.R
3cd920ffab5d88d43ef737d5b0cd5237 *R/sample.R
791f1a723207bc7f932303e193263ace *R/subpathway-method.R
072986579c423e632d25cfad86916899 *R/topologicalanalysis.R
4f71e032291d362f38de0ba91ac2e921 *R/visualize.R
ff7fa90d14b487bcab5185db77b8d2fc *data/datalist
8c2ebb791050de1f6576e774ca449b48 *data/hsa_ncbi-geneid_k2ri.rda
b6acee2f9c7c456c6d9f4c7c40406b6c *inst/doc/iSubpathwayMiner.Rnw
1af1b82f4b4ea2a81511ba2d5bd06b22 *inst/doc/iSubpathwayMiner.pdf
b0a6bc43e56d77ff323125396b4ed38f *inst/localdata/kgml/metabolic/ec/ec00010.xml
7bd814e8cc5add70c022b498f6d8d248 *inst/localdata/kgml/metabolic/ec/ec00020.xml
b6a5adc11444267a91cd08bd357bb33f *inst/localdata/kgml/metabolic/ko/ko00010.xml
133e6cbca6fa58a7174b4d0f184afc2e *inst/localdata/kgml/metabolic/ko/ko00020.xml
7f8900b92b22bf04a4cf2c18f2355728 *inst/localdata/kgml/non-metabolic/ko/ko04010.xml
abd25c1685de4b01b488b4706a12db3a *inst/localdata/kgml/non-metabolic/ko/ko04140.xml
9a2c42e0fe007fcb72571ee1459fc976 *inst/localdata/kgml/non-metabolic/ko/ko04330.xml
8d787716b68fefbeb1ed0349ca1e01c9 *inst/localdata/kgml/readme.txt
b4e41b11944a46896e9695fd24a7e9f7 *inst/localdata/ligand_update.lst
bc992f447334375e6088c9fd1cc92057 *inst/localdata/sce/s.cerevisiae.pos
3cbd4db42c9bbac669aa09d868e56623 *inst/localdata/sce/sce_enzyme.list
f268acc3e328879430600124a5547370 *inst/localdata/sce/sce_ko.list
f515d78dc66dce7a8bb2399dc6f6bc36 *inst/localdata/sce/sce_ncbi-geneid.list
b589efce04ca0868cd9422cba446fcf2 *inst/localdata/sce/sce_pathway.list
e7ed7cb0527a01b81b313780389d8f95 *inst/localdata/sce/sce_sgd-sce.list
decfb78c0027e50eeacd7673eec973e4 *inst/localdata/taxonomy
bcda66e7225342503eb6ccd984fa7aa9 *man/aaa-iSubpathwayMiner-package.Rd
7f4492d253233cbdcfaa7036532ef73a *man/expandNode.Rd
abdd0dc2a17c94e99a51de220c187cb7 *man/filterNode.Rd
0c2c6fa0dd1d688e219c3513c515809b *man/getBackground.Rd
e87efdbb7ddccaaad75aed96bbe9a5aa *man/getCombinedNetwork.Rd
4e1ed7987c7d07a181ea435541753ebf *man/getExample.Rd
07e2973df9c1962f60747f57c513a52f *man/getKcSubiGraph.Rd
ec85ea715e17f71ae48a768650de0b99 *man/getMetabolicGraph.Rd
3fbb41bcfca07a0d7c3107b4ebbe56e0 *man/getNodeLabel.Rd
21ba7f416b38fd058e0c0bcfce3d09fe *man/getNonMetabolicGraph.Rd
2f3547e90d47aacd417b74368881320a *man/getOrgAndIdType.Rd
797c57d1cebeb69c412b7d2cd94a2c50 *man/getPathway.Rd
11fc2ca2cde0a4de0b0ee51cbd2c6ed1 *man/getPrioBackground.Rd
991881620bd5df5deb96af990ceba4ef *man/getSimpleGraph.Rd
39a1532957efcfd5578122e7f8601674 *man/getUGraph.Rd
460b9e375380bec2bdcae61369d7a43a *man/go2go.Rd
a15c8fea8590c0670e51bd1f41647290 *man/iSubpathwayMiner-internal.Rd
5cbcb45d5ef7cfa045717a9fe4d30ff6 *man/identifyGraph.Rd
5c4a848185fb9c63089b0326b8678d80 *man/identifyTopo.Rd
c976d6258e4ab41df002d715cf9bd505 *man/initializeK2ri.Rd
bfdec9dfac5a04eccf7a96736bb87457 *man/k2ri.Rd
8bc13010de937bdbccd6b97f7fcb72bd *man/k2riEnvironment.Rd
d6b09d1591ec72a94d73c9ab1596f4e4 *man/mapNode.Rd
f39feee1564f292884a9be8d412f4664 *man/mergeNode.Rd
2a5fdbc13b942c03ec8a8f4ce05c6998 *man/plotAnnGraph.Rd
f2de8f07c896bde613c4c5c8aed2fd97 *man/plotGraph.Rd
f3c15cfb7e373fa58b8d31a46caaa781 *man/printGraph.Rd
bd69b5027492681d98165845a9a5cf36 *man/printTopo.Rd
36f0a901cfa960282bcbc1b8df74e040 *man/sampleComponent.Rd
f0849f6ce0390345167e4137e7e02d43 *man/simplifyGraph.Rd
4a5b7d4440f9efc13e50d5a2b184472d *man/updateCompound.Rd
151a7310799aaa8efb060ab4ea6a620b *man/updateOrgAndIdType.Rd
4f2c29980b1d5d2b02dd39de44844437 *man/updatePathway.Rd
edf16e1861dc2028286e91d299a37170 *man/updateTaxonomy.Rd
b6acee2f9c7c456c6d9f4c7c40406b6c *vignettes/iSubpathwayMiner.Rnw
