96c224fc05354bd93cb0e4e38f103117 *ChangeLog
8bf709d2ca8b6c64d80395bbc0572db7 *DESCRIPTION
e7412234af8c2326ba7d437a2467e8c3 *NAMESPACE
c2c73afd466bfc25e1438da1592feea6 *R/First.R
33b7623305e837aa24a6407e2484ab9f *R/RCS/First.R,v
e098b69fcfd3119f2a7aa530ff33408a *R/RCS/check.yval.R,v
2b70d61397d868088e2c17a567cc5f1a *R/RCS/ffun.R,v
5acbffdb7b1e9b8d41780b0f50cba433 *R/RCS/fitted.hmm.discnp.R,v
e0ac73bb1932af2df4803d72f896df13 *R/RCS/hmm.R,v
d7c2edb1d282f60d6512b730c3d82d02 *R/RCS/init.all.R,v
f211cb11659676a46c8fb58b5d1a6003 *R/RCS/logLikHmm.R,v
8f1221f03472b00e67a3db1524ee000d *R/RCS/mat2list.R,v
a64eb4ef463efae3c522b978970d8b24 *R/RCS/mps.R,v
1a534e59ce848f59171a2e02f17a9d96 *R/RCS/pr.R,v
e7722d631482bf76fdc641fe5c3d335c *R/RCS/recurse.R,v
659accbf5a313a6d4b7fd01dcc1549d2 *R/RCS/revise.ispd.R,v
cb8b173f762a5c70002fa1fd88d8b8b6 *R/RCS/revise.rho.R,v
7a56fee1a20edcb0a52dd52636600613 *R/RCS/revise.tpm.R,v
3c80925ccf768a51f7d1d4ea5561eebf *R/RCS/sim.hmm.R,v
7bec57092db176335935eac4c4e81726 *R/RCS/sp.R,v
7138d81efb770e4b4d3c27538f2476e6 *R/RCS/tidyup.R,v
830058e16c6db708863ab4ebc518a58d *R/RCS/viterbi.R,v
37dd95af86a32039777a13720cfe1b25 *R/anova.hmm.discnp.R
d006a911546289641553b85704e41a57 *R/bivDepStuff.R
c8ad163b122faca514504883869b1ee2 *R/check.yval.R
59f6b40763570c7b0e687c57d174a4da *R/checkConstColumns.R
bfe86fb41dd72e6f24866b296a6a3c7d *R/checkStartVal.R
00e106204b6307be87aaad912de9f2f8 *R/checkyXoK.R
d24a8f92658b600c1cf355b181814259 *R/cnvrtRho.R
5977e5fdd6b19e3e5221036d87f3b347 *R/derivf.R
9553d733df0603a2130310b2dd1b7279 *R/derivp.R
1e4f4753c74c51cc45a297fa7ecd0a96 *R/derivpi.R
756d398935c0ff5d106797632605c19b *R/directMaxStuff.R
75c2e0622b663e3d366b41abe380181d *R/extract.multipleHmmDataSets.R
928215244277149dec1000323d8f695e *R/ffun.R
a4fdb73a5db91e2bc024ec094d72ea3b *R/fitted.hmm.discnp.R
8eeea906e4111fc50590cfe6eecc112b *R/fix.tpm.R
d4203ea4eae83af910b63d38c2e4c63e *R/forgethgl.R
b6c66fe281d103c7acac0376da26bfd0 *R/get.gl.R
110bb9e6aea2433532f33dbaff792b94 *R/get.hgl.R
1642fddcd75aadd3edf9624a12183610 *R/get.l.R
d6faa7db88ae4fcb957183d9d8183f58 *R/hmm.R
e60739a614ea30383dde5cf5cebe85f3 *R/hmmBD.R
112ee96712a414ea4e1d7ec6915efff2 *R/hmmBI.R
159ada2bc32978b178080cbb2110eb82 *R/hmmLM.R
0ee364089c031b8fe7e551ce7c902cc3 *R/hmmNumOpt.R
eef3e3a0565fe762a93da23c875202dc *R/hmmSD.R
5f42d687714a95fddb91c4a7a4c6ce06 *R/hmmUV.R
56d938d317f960eb974ccad2de691802 *R/init.all.R
8975e1c8b86945431c7b860967790ff3 *R/lmstep.R
8bb98241df39bb8e577666b39c62e998 *R/logLikHmm.R
aa30856697dfc80a8a73b1f6ca183671 *R/makeDat.R
bfdb1ca9033a52cffabf47e42df83d19 *R/misstify.R
70977aa54fd1dfc9dd840ecec1e8e280 *R/mps.R
c6e954a2c9d4c66df54fcc8d4030e269 *R/nafracCalc.R
4e9fb9811cf9f98e1e54bc5c922fbffa *R/orgethgl.R
8d8179b0d31140a2d6115b67794f8d7f *R/paramExtract.R
925918b02e341b6426a92c9744bcbb86 *R/pr.R
6bf464b6d7022e202c7d917f0d22281f *R/predict.hmm.discnp.R
afb6fd4a5574b9c47bd2c955aec3b726 *R/predictEngineHmmDiscnp.R
e3c2dc6d936ec3fb44ff23857b3bc522 *R/recurse.R
3015453a4f5ed92fb0c1a84ef71e3428 *R/revise.ispd.R
65ce147bc5a16654d06fa0f0f1f52335 *R/revise.rho.R
08cd9fb369e33660c65833bb64b20536 *R/revise.tpm.R
8f1a919e948b2c5715c6c78ee4a2dba1 *R/rgethgl.R
0304937632c69428ea35c1d5168246eb *R/rhmm.R
cb2aaba47e4ac22d05ea212700bdebda *R/rhmm.default.R
7caa2c4e96b4589709437d9002233b1d *R/rhmm.hmm.discnp.R
c353bca65037cc9025747d8d494fb2a6 *R/scovmat.R
6a3bcf374b304999cb6be70d9c28a73c *R/simference.R
131ea25177817acbbb600f3daf959b9a *R/sp.R
ed8d3339ab4d17f1b951068e485ad198 *R/squantCI.R
88e70a62d93b1e1b1e1066196caea75c *R/steepest.R
059efc2cd64713e4f822898a593f8c66 *R/tidyList.R
baf437c54d73a5f755c76eb6818d59ae *R/update.hmm.discnp.R
998b9fa48aff086cdbb9e2c37e9630af *R/viterbi.R
b39a193f27733f56c4aab0afbfce5c36 *data/Bovine.rda
f69a96f856090b2c0c79f53ac3a048a6 *data/Cryptosporidiosis.rda
e633aea4d0c9aa146656350dc1fad794 *data/Downloads.rda
59c4c6561407638c1a34be1aedbf7ce3 *data/EricssonB_Jul2.rda
c738d7bff9378ffe95829fb222ca4d68 *data/FattyLiver.rda
67ef1ffb0fdd629944214b36c360e7d1 *data/FattyLiver2.rda
263a01fca207020a329f17a721463ae0 *data/Hanta.rda
4ee1bf2ddedf4af48ba959e7b26e244c *data/IPs.rda
dde879baa43fb44afc83675bec9facb0 *data/InfantEEGsleepstates.rda
8f4920eabd0f1a1a6da558dc2547dbf3 *data/LegionnairesDisease.rda
1221cc2b4d99649ad7e5dc2b55a3b596 *data/OffshoreRigcountsAlaska.rda
85d19939e1c8ba13830a2a8df2746532 *data/PriceStability.rda
25a599e10a3f3a3b5336b000fd196853 *data/Strikes.rda
25228f7f449138e820fdc41cb0567bb2 *data/SydColDisc.rda
cc48312e635dbfb64e36bf49231d6032 *data/WoodPeweeSong.rda
9c97fafdd969db45a546d0e331fba5c3 *data/ccprSim.rda
6164321af41bd8163dd76e28b5c91f4f *data/ftLiardFlows.rda
4ee6732cbf67c92d357cdc6a01d45446 *data/goldparticle380.rda
36022870b1fcc3d8994bdc54d4662559 *data/lesionCount.rda
37cc3fcc49728feda2c1a679f88c484e *data/linLandFlows.rda
a9484fa6529d8f1aae8752b3f1c87c3e *data/portMannFlows.rda
54b3489e99f17532e396b104c8e49167 *data/portMannSedCon.rda
d5d846b204bd4cc3655c392ef5426243 *data/portMannSedLoads.rda
dd41961396b612dbb4afc7fdcf73e55e *inst/Ratfor/RCS/afun.r,v
75869a842561e24d282d8ed2fc73eab8 *inst/Ratfor/RCS/bfun.r,v
f1d36db9f8e9fda32f12221e55c6dbdd *inst/Ratfor/RCS/gfun.r,v
7241424b21f65ca2f10e4dc859d31741 *inst/Ratfor/RCS/makefor,v
3efff20f39b0eaa0a000afb7ffc3e277 *inst/Ratfor/RCS/recurse.r,v
770ae0f29b53d84c091de81fae008445 *inst/Ratfor/RCS/xfun.r,v
ee20f158a71eeafac0c2d7154397db49 *inst/Ratfor/afun.r
07af2c190de1f7d838c3fc9a0d84e054 *inst/Ratfor/bfun.r
21b74905cf48999c573fc16da65bd783 *inst/Ratfor/getgl.r
92b1f7c5860d39ea7a56c24e3b9615e8 *inst/Ratfor/gethgl.r
58fd89ffba92c2154880332f6e9c1eb2 *inst/Ratfor/getl.r
5cbc32129adddcfc60272834a794ca4a *inst/Ratfor/gfun.r
3ff2ab745591b58c0265a9be9114ae8f *inst/Ratfor/makefor
16354605b2650e5a568b9a025de8034a *inst/Ratfor/recurse.r
b97264d24cd7880ce7fbad579da6953b *inst/Ratfor/xfun.r
ee255deea7c174b74e9c2071ab3ddd10 *man/SydColDisc.Rd
3f39b95507c4191b458bc3f6bfc545f0 *man/anova.hmm.discnp.Rd
2355aa790891c3e43f24eb7bc6638af1 *man/ccprSim.Rd
0b97b2b22662765e47c4cb69a664ac3d *man/cnvrtRho.Rd
bc86aeac058a7da2359a021b72ef5299 *man/fitted.hmm.discnp.Rd
5d9be6d4b4a9dc28b093f14b10468a0d *man/hmm.Rd
74a0394f256bb76d47c6a9eb69f96c16 *man/hmm.discnp-internal.Rd
49b6e573c4c613dc2c33cecc0be74e73 *man/hydroDat.Rd
380b1a58283d1143ada76b6e97f0af93 *man/lesionCount.Rd
387c1b9ab540e24ef7cbfe649812d9ca *man/logLikHmm.Rd
44f9e42b5f6af0034fe5ea820bd7eba6 *man/macros/defns.Rd
0d5d0a3c6d658053da7709b34ac1ca5b *man/misstify.Rd
61d19ae6eef5c199207a66f4b4172c22 *man/mps.Rd
988f41f740c4d999f5e4093b79f237b3 *man/nafracCalc.Rd
09eb726ff27233a05f620b809ecfa089 *man/pr.Rd
35609b65cdc23ade6d3a76940480bdb7 *man/predict.hmm.discnp.Rd
8c2368696560ff5be5e340b063072272 *man/rhmm.Rd
1f627303b583ea113682c46ce5ee8d33 *man/scovmat.Rd
2d4d6b95a0a02c5e79ce9f8cbeda791d *man/sp.Rd
d058d84f12f5c73cd5a2b59209275168 *man/squantCI.Rd
896e49be313cbe6af1175c58341f80bb *man/update.hmm.discnp.Rd
2dd71779a1ef41a4da3f76e97256539c *man/viterbi.Rd
6e879b6b61c6f953f3a2eb8e958ac4c8 *man/weissData.Rd
948b1aff7e503c1a07620c00c1388599 *src/afun.f
63c259f62e8ab26deb0aa8aed015b8dc *src/bfun.f
84a6def4fee734b4891d2c817d4664d3 *src/getgl.f
3be872b605c44cc58a8b26fd3a9b4c4b *src/gethgl.f
f6c9de360be0cca3742c198d853437dc *src/getl.f
d474b8baa6ca644cb43de57825558905 *src/gfun.f
8cb448204c8c4f966e9407d708d31ff7 *src/init.c
f2ad3afed89d81822a82fdab6bb2aa8f *src/recurse.f
6596740e33f4d310bc041be782455fcd *src/xfun.f
