2005-09-02 12:43  warnes

	* R/assert.R, man/assert.Rd: Add assert() and documentation

2005-09-02 12:28  warnes

	* man/defmacro.Rd: Fix problem in defmacro.Rd file: don't use
	  \code{} in the example section.

2005-08-31 16:00  tag RELEASE_2_0_9

2005-08-31 16:00  warnes

	* DESCRIPTION, NAMESPACE, R/defmacro.R, man/defmacro.Rd: Adding the
	  defmacro() function, extracted from

	    Lumley T. "Programmer's Niche: Macros in {R}", R News, 2001,
	  Vol 1,
	    No. 3, pp 11--13, \url{http://CRAN.R-project.org/doc/Rnews/}

2005-08-31 12:18  warnes

	* DESCRIPTION, DESCRIPTION.in: Add stand-alone DESCRIPTION file and
	  remove old DESCRIPTION.in file.

2005-06-13 13:08  nj7w (Nitin Jain)

	* R/mixedsort.R: Fixed a bug in mixedsort - check if "which.na" and
	  "which.blank" is numeric(0) before subsetting the datasets.

2005-06-09 10:20  nj7w (Nitin Jain)

	* R/RSCompat.S, R/combinations.R, R/dirichlet.R, R/foldchange.R,
	  R/invalid.R, R/logit.R, R/mixedsort.R, R/oddeven.R, R/permute.R,
	  R/quantcut.R, R/running.R, R/scat.R, man/ELISA.Rd,
	  man/combinations.Rd, man/dirichlet.Rd, man/foldchange.Rd,
	  man/invalid.Rd, man/logit.Rd, man/mixedsort.Rd, man/oddeven.Rd,
	  man/permute.Rd, man/quantcut.Rd, man/running.Rd, man/scat.Rd:
	  Updating the version number, and various help files to
	  synchronize splitting of gregmisc bundle in 4 individual
	  components.

2005-05-10 18:05  warnes

	* R/mixedsort.R: Fix handling of NA's in mixedorder.  We were using
	  a high UTF character to try to put NA's at the end of the sort
	  order, but R 2.1.0 checks if characters are in the correct range.
	  Instead, we explicitly force NA's to the end.

2005-04-06 20:28  warnes

	* NAMESPACE, R/scat.R, man/scat.Rd: - Add scat() function which
	  writes its arguments to stderr and   flushes so that output is
	  immediately displayed, but only if   'getOption("DEBUG")' is
	  true.

2005-04-01 23:19  tag release_2_0_5

2005-04-01 23:19  tag release_2_0_6

2005-04-01 23:19  warnes

	* NAMESPACE, R/drop.levels.R, man/drop.levels.Rd: Move
	  drop.levels() from gtools to gdata.

2005-04-01 23:17  warnes

	* R/mixedsort.R: Minor reordering of functions in file

2005-04-01 23:14  warnes

	* R/frameApply.R, NAMESPACE, man/frameApply.Rd: Move frameApply()
	  to gdata package.

2005-04-01 22:28  warnes

	* R/mixedsort.R: Fix error if only one value passed to mixedorder.

2005-04-01 21:37  warnes

	* man/quantcut.Rd, R/quantcut.R: Add proper handling where more
	  than one quantile obtains the same value

2005-04-01 18:00  warnes

	* man/: ELISA.Rd, combinations.Rd, dirichlet.Rd, drop.levels.Rd,
	  foldchange.Rd, invalid.Rd, logit.Rd, mixedsort.Rd, oddeven.Rd,
	  permute.Rd, quantcut.Rd, running.Rd: Add CVS ID tag to file
	  headers.

2005-04-01 18:00  warnes

	* R/frameApply.R, man/frameApply.Rd: Fixes from Jim Rogers for R
	  CMD check problems in frameApply

2005-03-31 14:02  warnes

	* R/drop.levels.R, R/frameApply.R, man/drop.levels.Rd,
	  man/frameApply.Rd: Updates to drop.levels() and frameApply() from
	  Jim Rogers

2005-03-31 14:01  warnes

	* man/ELISA.Rd, data/ELISA.rda: Add ELISA data set used by
	  frameApply and drop.levels examples

2005-02-25 18:02  warnes

	* man/frameApply.Rd: Replace 'T' with TRUE.

2005-02-25 17:54  warnes

	* man/frameApply.Rd: Remove dependency on ELISA data set for the
	  example.

2005-02-25 16:00  warnes

	* NAMESPACE: Add drop.levels, frameApply to namespace export.

2005-02-14 19:40  warnes

	* R/drop.levels.R, R/frameApply.R, man/drop.levels.Rd,
	  man/frameApply.Rd: Add frameApply and drop.levels contributed by
	  Jim Rogers.

2005-01-12 15:50  warnes

	* DESCRIPTION.in: Add dependency on R 1.9.0+ to prevent poeple from
	  installing on old versions of R which don't support namespaces.

2004-09-27 17:01  tag rel_2_0_0

2004-09-27 17:01  warneg

	* DESCRIPTION, DESCRIPTION.in, man/running.Rd: Updated to pass R
	  CMD check.

2004-09-03 13:27  warneg

	* DESCRIPTION, NAMESPACE, R/dirichlet.R, R/foldchange.R,
	  R/invalid.R, R/mixedsort.R, R/oddeven.R, R/permute.R,
	  R/quantcut.R, R/running.R, man/running.Rd: initial bundle checkin

2004-09-02 13:14  tag initial

2004-09-02 13:14  warneg

	* DESCRIPTION, DESCRIPTION.in, NAMESPACE: Initial revision

2004-09-02 13:14  warneg

	* DESCRIPTION, DESCRIPTION.in, NAMESPACE: [no log message]

2004-08-27 17:57  warnes

	* R/mixedsort.R, man/mixedsort.Rd: Fixed bug in mixedsort, and
	  modified reorder.factor to use mixedsort.

2004-08-26 16:08  warnes

	* R/mixedsort.R: - Fix bug pointed out by Jim Rogers.  - Use a more
	  distictive internal separator: $@$ instead of just $ -
	  Capitalization is now irrelevent for search order (unlike ASCII).

2004-06-08 11:49  warnes

	* R/running.R, man/running.Rd: Nitin Jain added by= parameter to
	  allow specifying separation between groups.

2004-05-26 09:40  tag rel_1_11_0

2004-05-26 09:40  tag rel_1_11_1

2004-05-26 09:40  tag rel_1_11_2

2004-05-26 09:40  warnes

	* man/combinations.Rd: Escape underscores in email addresses so
	  Latex is happy.

2004-05-26 09:18  warnes

	* R/combinations.R: Replace 'T' with 'TRUE' to pass R CMD check.

2004-05-25 13:11  warnes

	* R/combinations.R: Remove extraneous comments.

2004-05-25 13:08  warnes

	* R/combinations.R: Fix an error in the code when using
	  repeats.allow=T and r>2.  Bug report and fix both due to
	  Elizabeth Purdom <epurdom@stanford.edu>.

2004-05-24 13:36  warnes

	* R/invalid.R: Check if argument is a vector before doing is.na to
	  avoid generating a warning.

2004-05-24 13:17  warnes

	* R/invalid.R, man/invalid.Rd: Add invalid() function for testing
	  if a parameter value is non-missing, non-NA, non-NULL.

2004-04-27 10:33  warnes

	* R/running.R, man/running.Rd: Replaced argument `as.list' with
	  `simplify'.  Updated documentation, and updated examples
	  appropriately.

2004-04-26 12:37  warnes

	* R/running.R, man/running.Rd: Added as.list argument to return one
	  list element per evaluation.

2004-03-26 17:21  tag gregmisc_0_10_2

2004-03-26 17:21  warnes

	* man/combinations.Rd: Uncomment and fix large 'n' example.

2004-03-26 17:19  warnes

	* man/running.Rd: - Update to match changes in running() - Add
	  examples to illustrate new arguments.  - Modify running
	  correlation plot example to be more clear.

2004-03-26 17:12  warnes

	* R/running.R: More of the same.

2004-03-26 10:34  warnes

	* R/running.R: Fix bug discovered by Sean Davis
	  <sdavis2@mail.nih.gov>.  The running function took an improper
	  shortcut.  When allow.fewer=FALSE it was still passing shorter
	  lists of elements to the called function, and then overwriting
	  the results for the shorter lists with NAs.  The code now skips
	  evaluation of the function on lists shorter than the specified
	  length when allow.fewer=FALSE.

2004-01-20 23:31  tag gregmisc_0_8_9

2004-01-20 23:31  tag rel_0_8_8

2004-01-20 23:31  warnes

	* R/capture.R: - Mark sprint() as depreciated.	- Replace
	  references to sprint with capture.output() - Use match.arg for
	  halign and valign arguments to textplot.default.  - Fix
	  textplot.character so that a vector of characters is properly
	  displayed. Previouslt, character vectors were plotted on top of
	  each	 other.

2003-12-02 21:46  tag rel_0_8_5

2003-12-02 21:46  tag rel_0_8_7

2003-12-02 21:46  warnes

	* man/foldchange.Rd: - match function argument defaults with
	  'usage'

2003-11-21 18:00  warnes

	* man/foldchange.Rd:
	  Removed 'deqn' call that was confusing things.

2003-11-21 15:54  warnes

	* man/logit.Rd: Add email address to author field

2003-11-21 15:35  warnes

	* R/foldchange.R, man/foldchange.Rd:
	  - new files

2003-11-21 14:54  warnes

	* R/mixedsort.R, man/mixedsort.Rd:
	  - Change 'T' to 'TRUE' in mixedsort.R - Add missing brace in
	  mixedsort.Rd

2003-11-20 10:56  warnes

	* R/oddeven.R, man/oddeven.Rd:
	  - Move 'odd' and 'even' functions to a separate file & provide
	  documentation

2003-11-18 17:47  warnes

	* R/mixedsort.R, man/mixedsort.Rd:
	  - Renamed smartsort to mixedsort and added documentation.

2003-11-10 17:11  warnes

	* R/capture.R, man/capture.Rd:
	  - Add files contributed by Arni Magnusson
	  <arnima@u.washington.edu>. As well as some of my own.

2003-05-23 14:14  warnes

	* R/logit.R, man/logit.Rd:
	  - library() backported from 1.7-devel.  This version of the
	  function   adds the "pos=" argument to specify where in the
	  search path the   library should be placed.

	  - updated .First.lib to use library(...pos=3) for MASS to avoid
	  the	'genotype' data set in MASS from masking the genotype
	  funciton in	genetics when it loads gregmisc

	  - Added logit() inv.logit() matchcols() function and
	  corresponding docs

2003-04-22 12:00  tag rel_0_8_4

2003-04-22 12:00  warnes

	* man/combinations.Rd: - Fixed tpyo in example that allowed
	  combinations(500,2) to run when   it should have been ignred for
	  testing..

2003-04-10 12:22  warnes

	* man/combinations.Rd:
	  - Added note about the need to increase options("expressions") to
	  use	large values for 'n'.  Prompted by bug report from Huan
	  Huang   <huan.huang@bnpparibas.com

2003-04-04 08:58  tag rel_0_8_3

2003-04-04 08:58  warnes

	* R/RSCompat.S:
	  - Replace 'T' with 'TRUE'

2003-04-04 08:49  warnes

	* R/dirichlet.R:
	  - Change occurences of 'T' to 'TRUE'

2003-04-04 08:46  warnes

	* man/capture.Rd:
	  - Allow optional arguments to sprint to be passed to print - Fix
	  R CMD check errors

2003-04-04 08:45  warnes

	* R/capture.R:
	  - Allow optional arguments to sprint to be passed to print

2003-04-03 08:20  warnes

	* man/capture.Rd:
	  - Had mistyped 'sprint' as 'sprintf'.

2003-04-03 08:18  warnes

	* man/capture.Rd: - Add help file for capture and sprintf.

2003-04-02 17:28  warnes

	* R/capture.R:
	  - Added file 'capture.R' containing capture() and sprint().

2003-03-07 10:48  tag rel_0_8_2

2003-03-07 10:48  warnes

	* R/RSCompat.S:
	  - Minor changes to code to allow the package to be provided as an
	  S-Plus chapter.

2003-01-30 16:56  tag rel_0_8_0

2003-01-30 16:56  warnes

	* man/running.Rd: - Fixed typo in email address.

2003-01-02 10:42  tag rel_0_7_5

2003-01-02 10:42  warnes

	* R/RSCompat.S: - Add nlevels function.

2002-10-11 14:22  tag rel_0_7_2

2002-10-11 14:22  tag rel_0_7_3

2002-10-11 14:22  warnes

	* R/permute.R, man/permute.Rd:
	  - Add permute() function (wraper for sample) and man page

2002-10-11 14:21  warnes

	* man/dirichlet.Rd:
	  - Escaped underscores in my email address that was causing a
	  parse   error in the {r,p}dirichlet man page.

2002-09-30 16:43  warnes

	* R/dirichlet.R, man/dirichlet.Rd:
	  - Added rdirichlet() and ddirichlet() with accompaning help page
	  and tests.

2002-09-24 10:57  tag rel_0_7_0

2002-09-24 10:57  warnes

	* R/running.R:
	  - Fixed error where running was always calling running2 with
	  'fun=mean', ignoring the specified funtion.

2002-09-23 09:59  tag rel_0_6_0

2002-09-23 09:59  warnes

	* man/: combinations.Rd, quantcut.Rd: - Modified all files to
	  include CVS Id and Log tags.

2002-09-23 09:38  warnes

	* R/combinations.R:
	  - Added CrossTable() and barplot2() code and docs contributed by
	  Marc Schwartz.  - Permit combinations() to be used when r>n
	  provided repeat.allowed=TRUE - Bumped up version number

2002-08-01 15:37  tag rel_0_5_5

2002-08-01 15:37  warnes

	* R/running.R:
	  - Corrected documentation mismatch for ci, ci.default.

	  - Replaced all occurences of '_' for assignment with '<-'.

	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with	 the spelled out version.

	  - Updaded version number and date.

2002-04-08 20:51  tag rel_0_5_3

2002-04-08 20:51  tag rel_0_5_4

2002-04-08 20:51  warneg

	* R/combinations.R, man/combinations.Rd, man/running.Rd:
	  Checkin for version 0.5.3

2002-03-26 09:49  tag rel_0_5_1

2002-03-26 09:49  warneg

	* man/quantcut.Rd:
	  Initial Checkin

2002-03-26 09:29  warneg

	* R/quantcut.R:
	  Initial checkin.

2002-03-19 22:44  warneg

	* R/RSCompat.S: - Added definition of is.R function.

	  - Added boxplot.formula

2002-03-07 18:39  warneg

	* man/running.Rd: - Added documentation and example for running2

2002-03-07 18:38  warneg

	* R/running.R:
	  - Added "running2", which handles both univariate and bivariate
	  cases - Modified "running" to call "running2"

2002-02-04 21:20  warneg

	* R/RSCompat.S:
	  - Fix typo that caused code meant to run only under S-Plus to run
	  under R, causing problems.

2001-12-19 17:45  warneg

	* R/RSCompat.S: - Added code for %in%.

2001-09-18 10:15  tag rel_0_5_0

2001-09-18 10:15  warneg

	* R/RSCompat.S:
	  Release 0.3.2

2001-09-01 15:19  warneg

	* R/RSCompat.S:
	  Initial checkin.

2001-08-31 20:01  warneg

	* R/running.R, man/running.Rd: Release 0.3.0

2001-08-25 01:53  warneg

	* R/running.R: Initial CVS checkin.

2001-08-25 01:50  warneg

	* man/combinations.Rd: Fixed a typo and a syntax error.

2001-08-24 23:59  warneg

	* man/running.Rd: Initial Checkin

2001-06-29 09:23  warneg

	* R/combinations.R, man/combinations.Rd:
	  Initial revision.

