2007-07-26 00:20  warnes

	* DESCRIPTION, NAMESPACE, NEWS, R/estimable.mlm.R,
	  man/estimable.Rd: Add support for mlm to estimable().

2007-07-26 00:10  warnes

	* R/estimable.R, R/estimable.mlm.R: Add estimable method for mlm
	  objects

2007-03-09 22:35  warnes

	* R/ci.R: Remove stray character

2007-03-09 20:10  warnes

	* NEWS: Update NEWS file.

2007-03-09 20:07  warnes

	* DESCRIPTION: Update version number

2007-03-09 20:06  warnes

	* R/ci.R: Minor code formatting changes

2007-03-09 20:06  warnes

	* R/est.lmer.R, man/ci.Rd: Flip lower and upper interval in
	  ci.lmer(). Add example to man page.

2007-03-09 19:43  warnes

	* man/ci.Rd, man/estimable.Rd: Fix some old email addressses that
	  got missed

2006-11-29 00:11  warnes

	* NEWS: Update for 2.13.1

2006-11-29 00:05  warnes

	* NAMESPACE: Correct declartion of S3 methods for estimable()

2006-11-29 00:05  warnes

	* DESCRIPTION: Add additional suggested packages

2006-11-29 00:04  warnes

	* R/estimable.R, man/estimable.Rd: - Add generic
	  - Fix code vs. doc inconsistiencies

2006-11-28 22:38  warnes

	* R/ci.R, R/estimable.R, R/fast.prcomp.R: Remove extraneous comma
	  that causes errors in R 2.5.0

2006-11-27 20:45  warnes

	* DESCRIPTION, NEWS: Update for 2.13.1

2006-11-27 20:36  warnes

	* DESCRIPTION, NAMESPACE: Add missing export of methods for
	  estimable()

2006-11-14 22:25  ggorjan

	* trunk/gdata/man/combine.Rd, trunk/gdata/man/frameApply.Rd,
	  R/ci.R, R/fast.prcomp.R, man/ci.Rd, trunk/gplots/R/bandplot.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/lowess.R,
	  trunk/gplots/R/plot.lm.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/residplot.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/boxplot.n.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd,
	  trunk/gtools/R/combinations.R, trunk/gtools/R/running.R,
	  trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd:
	  Removed executable property

2006-08-02 22:21  warnes

	* trunk/BalloonPlotPaper/BalloonPlot.pdf,
	  trunk/BalloonPlotPaper/BalloonPlot.tex,
	  trunk/MSOfficeUtil/DESCRIPTION,
	  trunk/PathwayModeling/thesispaper/slides.tex,
	  trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd,
	  trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd,
	  trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd,
	  trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd,
	  trunk/exp.ssize/inst/doc/ssize.pdf,
	  trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION,
	  trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd,
	  trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd,
	  trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd,
	  trunk/gdata/inst/doc/gregmisc.tex,
	  trunk/gdata/man/ConvertMedUnits.Rd,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gdata/man/trim.Rd, trunk/gdata/man/unmatrix.Rd,
	  trunk/gdata/man/upperTriangle.Rd, man/fast.prcomp.Rd,
	  man/fit.contrast.Rd, man/glh.test.Rd, man/make.contrasts.Rd,
	  trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd,
	  trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd,
	  trunk/gplots/man/overplot.Rd, trunk/gplots/man/plot.lm2.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd,
	  trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd,
	  trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd,
	  trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
	  trunk/gregmisc/DESCRIPTION,
	  trunk/gregmisc/gregmisc/DESCRIPTION.standalone,
	  trunk/gregmisc/inst/doc/gregmisc.tex,
	  trunk/gtools/man/addLast.Rd, trunk/gtools/man/assert.Rd,
	  trunk/gtools/man/capture.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/defmacro.Rd, trunk/gtools/man/dirichlet.Rd,
	  trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
	  trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
	  trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd,
	  trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd,
	  trunk/gtools/man/scat.Rd, trunk/gtools/man/setTCPNoDelay.Rd,
	  trunk/nws/DESCRIPTION, trunk/qvalue/DESCRIPTION,
	  trunk/qvalue/man/print.qvalue.Rd, trunk/ssize/DESCRIPTION,
	  trunk/ssize/man/pow.Rd: Update my email address

2006-06-06 19:17  nj7w

	* man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd: Updated ci,
	  estimable and fit.contrast as per Randall Johnson

2006-06-05 21:00  nj7w

	* DESCRIPTION: Additions as per Randall C Johnson

2006-06-05 20:59  nj7w

	* R/ci.R, R/estimable.R, R/fit.contrast.R, R/to.est.R: Additions as
	  per Randall C Johnson

2006-06-05 20:57  nj7w

	* R/est.lmer.R: - New function to estimate CI's and p-values using
	  mcmcsamp() from the
	  Matrix package

2006-05-05 18:29  nj7w

	* R/CrossTable.R, man/CrossTable.Rd: Fixed an error: According to
	  Marc Schwartz - there was an error when a matrix without
	  dimnames(or names(dimnames)) was passed as x argument

2005-12-13 16:03  nj7w

	* ChangeLog: Removed ChangeLog

2005-12-13 16:02  nj7w

	* NEWS: Updated NEWS

2005-12-12 21:57  nj7w

	* DESCRIPTION: Updated version number for CRAN

2005-12-04 06:27  warnes

	* NEWS: Update for 2.11.0

2005-12-04 06:12  warnes

	* DESCRIPTION, NAMESPACE, R/ci.R, R/estimable.R, R/fit.contrast.R,
	  R/to.est.R, man/ci.Rd, man/estimable.Rd: Integration of code
	  changes suggested by Randall C Johnson to add
	  support for lmer (lme version 4) objects to ci(), estimable(),
	  and
	  fit.contrast().
	  
	  Addition of simplified coefficient specificaiton for estimable()
	  based on a function provided by Randall C Johnson. It is now
	  possible to do things like:
	  estimable(reg, c("xB"=1,"xD"=-1) )
	  instead of:
	  estimable(reg, c( 0, 1, 0, -1) )
	  which should make estimable much easier to use for large models.

2005-12-01 16:54  nj7w

	* man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd,
	  man/fit.contrast.Rd, man/make.contrasts.Rd,
	  trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd,
	  trunk/gplots/man/overplot.Rd, trunk/gplots/man/plotmeans.Rd,
	  trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
	  trunk/gtools/man/combinations.Rd, trunk/gtools/man/foldchange.Rd,
	  trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
	  trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
	  trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd:
	  Updated Greg's email address

2005-10-27 11:21  warnes

	* DESCRIPTION: Update version number. Bump minor version since we
	  added functionality.

2005-10-27 10:33  warnes

	* DESCRIPTION, NAMESPACE: Add ci.binom() to NAMESPACE, bump version

2005-10-26 13:39  warnes

	* R/ci.R, man/ci.Rd: Add ci.binom

2005-10-25 21:18  warnes

	* NAMESPACE: Add gdata::nobs to import list. Needed by ci()

2005-09-12 15:44  nj7w

	* trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/trim.Rd,
	  trunk/gdata/man/unmatrix.Rd, man/fast.prcomp.Rd, man/glh.test.Rd,
	  trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd,
	  trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd,
	  trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd,
	  trunk/gtools/man/assert.Rd, trunk/gtools/man/dirichlet.Rd,
	  trunk/gtools/man/permute.Rd, trunk/gtools/man/scat.Rd: Updated
	  Greg's email

2005-09-07 15:31  nj7w

	* man/CrossTable.Rd: Fixed man page

2005-09-06 21:34  nj7w

	* DESCRIPTION: Updated DESCRIPTION

2005-09-06 21:34  nj7w

	* NEWS: Added NEWS

2005-09-06 16:21  nj7w

	* DESCRIPTION: Fixed the Package name

2005-09-02 23:10  nj7w

	* ChangeLog, trunk/gplots/ChangeLog: Added ChangeLog

2005-08-31 16:28  nj7w

	* trunk/gdata/DESCRIPTION, DESCRIPTION, trunk/gplots/DESCRIPTION:
	  Added DESCRIPTION file

2005-08-31 16:27  nj7w

	* trunk/gdata/DESCRIPTION.in, DESCRIPTION.in,
	  trunk/gplots/DESCRIPTION.in: removed DESCRIPTION.in

2005-07-11 21:35  nj7w

	* R/CrossTable.R, man/CrossTable.Rd: Revision based on Marc
	  Schwartz's suggestions:
	  1) Added 'dnn' argument to enable specification of dimnames as
	  per table()
	  2) Corrected bug in SPSS output for 1d table, where proportions
	  were being printed and not percentages ('%' output)

2005-06-09 14:20  nj7w

	* trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R,
	  trunk/gdata/R/combine.R, trunk/gdata/R/elem.R,
	  trunk/gdata/R/env.R, trunk/gdata/R/frameApply.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/R/unmatrix.R, trunk/gdata/inst/perl/IO/AtomicFile.pm,
	  trunk/gdata/inst/perl/IO/InnerFile.pm,
	  trunk/gdata/inst/perl/IO/Lines.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm.html,
	  trunk/gdata/inst/perl/IO/ScalarArray.pm,
	  trunk/gdata/inst/perl/IO/Stringy.pm,
	  trunk/gdata/inst/perl/IO/Wrap.pm,
	  trunk/gdata/inst/perl/IO/WrapTie.pm,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/drop.levels.Rd, trunk/gdata/man/interleave.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd,
	  trunk/gdata/man/reorder.Rd, R/ci.R, R/coefFrame.R, R/estimable.R,
	  R/fast.prcomp.R, R/fit.contrast.R, R/glh.test.R,
	  R/make.contrasts.R, man/CrossTable.Rd, man/ci.Rd,
	  man/coefFrame.Rd, man/estimable.Rd, man/fast.prcomp.Rd,
	  man/fit.contrast.Rd, man/glh.test.Rd, man/make.contrasts.Rd,
	  trunk/gplots/R/balloonplot.R, trunk/gplots/R/bandplot.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
	  trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
	  trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
	  trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/1,
	  trunk/gplots/man/bandplot.Rd, trunk/gplots/man/barplot2.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
	  trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/residplot.Rd,
	  trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd,
	  trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R,
	  trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
	  trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R,
	  trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
	  trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
	  trunk/gtools/R/running.R, trunk/gtools/R/scat.R,
	  trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd,
	  trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
	  trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
	  trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd,
	  trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating
	  the version number, and various help files to synchronize
	  splitting of gregmisc bundle in 4 individual components.

2005-06-09 14:13  nj7w

	* R/CrossTable.R: Updates by Marc Schwartz:
	  CrossTable:
	  
	  # Revision 2.0 2005/04/27
	  # Added 'format = "d"' to all table count output
	  # so that large integers do not print in
	  # scientific notation

2005-05-13 18:59  nj7w

	* trunk/gdata/R/read.xls.R, man/CrossTable.Rd,
	  trunk/gplots/man/heatmap.2.Rd: 1) Using dQuote.ascii function in
	  read.xls as the new version of dQuote doesn't work proprly with
	  UTF-8 locale.
	  2) Modified CrossTable.Rd usage in gmodels
	  3) Modified heatmap.2 usage in gplots.

2005-05-11 13:51  warnes

	* DESCRIPTION.in, NAMESPACE, trunk/gregmisc/DESCRIPTION: Add
	  dependency on gdata::frameApply.

2005-03-31 20:32  warnes

	* NAMESPACE: Add ceofFrame function to NAMESPACE

2005-03-31 19:05  warnes

	* man/coefFrame.Rd: coefFrame example needs to properly load ELISA
	  data from gtools package

2005-03-31 18:31  warnes

	* R/CrossTable.R, man/CrossTable.Rd, man/ci.Rd, man/estimable.Rd,
	  man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
	  man/make.contrasts.Rd: Ensure that each file has $Id$ header, and
	  no $Log$

2005-03-31 18:30  warnes

	* R/coefFrame.R, man/coefFrame.Rd: Add coefFrame() function
	  contributed by Jim Rogers

2005-01-18 19:53  warnes

	* R/CrossTable.R: Removed Windows Line Endings

2005-01-14 21:40  nj7w

	* man/CrossTable.Rd: Updated the manual to reflect prop.chisq
	  change in its R file.

2005-01-14 19:14  warnes

	* R/CrossTable.R: Nitin added display of the Chisquare contribution
	  of each cell, as suggested
	  by Greg Snow.

2005-01-12 20:50  warnes

	* trunk/gdata/DESCRIPTION.in, DESCRIPTION.in,
	  trunk/gplots/DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add
	  dependency on R 1.9.0+ to prevent poeple from installing on old
	  versions of R which don't support namespaces.

2004-12-23 19:32  nj7w

	* R/CrossTable.R, man/CrossTable.Rd: Split the function
	  print.CrossTable.vector in two parts - for SAS behaiour and SPSS
	  behaviour. Also put the code of printing statistics in a function
	  'print.statistics'

2004-12-21 22:38  warnes

	* R/CrossTable.R: Added & extended changes made by Nitin to
	  implement 'SPSS' format, as suggested by
	  Dirk Enzmann <dirk.enzmann@jura.uni-hamburg.de>.

2004-09-30 21:03  warneg

	* man/glh.test.Rd: Fix typos.

2004-09-27 21:01  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory, DESCRIPTION,
	  DESCRIPTION.in, trunk/gplots/DESCRIPTION,
	  trunk/gplots/DESCRIPTION.in, trunk/gplots/man/sinkplot.Rd,
	  trunk/gplots/man/textplot.Rd, trunk/gregmisc/.Rhistory,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/DESCRIPTION,
	  trunk/gtools/DESCRIPTION.in, trunk/gtools/man/running.Rd: Updated
	  to pass R CMD check.

2004-09-03 22:44  warneg

	* man/fit.contrast.Rd: Add explicit package to call to quantcut in
	  example.

2004-09-03 17:27  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/R/Args.R,
	  trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/man/reorder.Rd, DESCRIPTION, NAMESPACE,
	  R/CrossTable.R, R/ci.R, R/estimable.R, R/fast.prcomp.R,
	  R/fit.contrast.R, R/glh.test.R, R/make.contrasts.R,
	  man/estimable.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
	  man/make.contrasts.Rd, trunk/gplots/DESCRIPTION,
	  trunk/gplots/NAMESPACE, trunk/gplots/R/balloonplot.R,
	  trunk/gplots/R/bandplot.R, trunk/gplots/R/barplot2.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
	  trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
	  trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
	  trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
	  trunk/gplots/R/wapply.R, trunk/gtools/DESCRIPTION,
	  trunk/gtools/NAMESPACE, trunk/gtools/R/dirichlet.R,
	  trunk/gtools/R/foldchange.R, trunk/gtools/R/invalid.R,
	  trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
	  trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
	  trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: initial
	  bundle checkin

2004-09-02 17:14  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory, DESCRIPTION,
	  DESCRIPTION.in, NAMESPACE, trunk/gplots/DESCRIPTION,
	  trunk/gplots/DESCRIPTION.in, trunk/gplots/NAMESPACE,
	  trunk/gplots/man/1, trunk/gplots/man/residplot.Rd,
	  trunk/gregmisc/.Rhistory, trunk/gtools/DESCRIPTION,
	  trunk/gtools/DESCRIPTION.in, trunk/gtools/NAMESPACE: Initial
	  revision

2004-05-25 02:57  warnes

	* R/CrossTable.R, man/CrossTable.Rd: Updates from Mark Schwartz.

2004-04-13 11:41  warnes

	* man/estimable.Rd: Fix latex warning: it doesn't like double
	  subscripts.

2004-03-26 22:28  warnes

	* man/fast.prcomp.Rd: Reflect movement of code from 'mva' package
	  to 'stats' in R 1.9.0.

2004-03-25 20:09  warnes

	* R/estimable.R, man/estimable.Rd: - Estimable was reporting
	  sqrt(X^2) rather than X^2 in the output.
	  - Provide latex math markup for linear algebra expressions in
	  help text.
	  - Other clarifications in help text

2004-03-25 18:17  warnes

	* R/estimable.R, man/estimable.Rd: Add enhancements to estimable()
	  provided by S�ren H�jsgaard
	  \email{sorenh@agrsci.dk}:
	  
	  I have made a modified version of the function [..] which
	  1) also works on geese and gee objects and
	  2) can test hypotheses af the forb L * beta = beta0 both as a
	  single Wald test and row-wise for each row in L.

2003-11-17 21:40  warnes

	* R/fit.contrast.R: - Fix incorrect handling of glm objects by
	  fit.contrast, as reported
	  by Ulrich Halekoh, Phd <ulrich.halekoh@agrsci.dk>.
	  
	  - Add regression test code to for this bug.

2003-08-07 03:49  warnes

	* R/ci.R: - Fixed incorrect denominator in standard error for mean
	  in ci.default.

2003-04-22 17:24  warnes

	* R/fit.contrast.R: - the variable 'df' was used within the lme
	  code section overwriting
	  the argument 'df'.

2003-03-12 17:58  warnes

	* man/fit.contrast.Rd: - Fixed a typo in the example
	  - Added to lme example

2003-03-07 15:48  warnes

	* R/fast.prcomp.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/qqnorm.aov.R, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/RSCompat.S: - Minor changes to code to allow the
	  package to be provided as an
	  S-Plus chapter.

2003-01-30 21:53  warnes

	* R/fit.contrast.R, man/fit.contrast.Rd: - Renamed 'contrast.lm' to
	  'fit.contrast'. This new name is more
	  descriptive and makes it easier to create and use methods for
	  other
	  classes, eg lme.
	  
	  - Enabled fit.contrast for lme object now that Doug Bates has
	  provided
	  the necessary support for contrasts in the nlme package.
	  
	  - New contrast.lm function which generates a 'depreciated'
	  warning and
	  calls fit.contrast
	  
	  - Updated help text to match changes.

2003-01-30 21:41  warnes

	* R/CrossTable.R, man/CrossTable.Rd: - Removed argument 'correct'
	  and now print separate corrected values
	  for 2 x 2 tables.
	  - Added arguments 'prop.r', 'prop.c' and 'prop.t' to toggle
	  printing
	  of row, col and table percentages. Default is TRUE.
	  - Added argument 'fisher' to toggle fisher exact test. Default is
	  FALSE.
	  - Added McNemar test to statistics and argument 'mcnemar' to
	  toggle
	  test. Default is FALSE.
	  - Added code to generate an invisible return list containing
	  table
	  counts, proportions and the results of the appropriate
	  statistical tests.

2003-01-30 14:58  warnes

	* R/make.contrasts.R: - Added explicit check to ensure that the
	  number of specified
	  contrasts is less than or equal to the ncol - 1. Previously, this
	  failed with an obtuse error message when the contrast matrix had
	  row
	  names, and silently dropped contrasts over ncol-1.

2002-11-04 14:13  warnes

	* R/CrossTable.R: - Moved fisher.test() to after table is printed,
	  so that table is
	  still printed in the event that fisher.test() results in errors.

2002-10-29 23:06  warnes

	* R/fast.prcomp.R, man/fast.prcomp.Rd: - Fixes to fast.svd to make
	  it actually work.
	  - Updates to man page to fix mistmatches between code and docs
	  and to
	  fix warnings.

2002-10-29 23:00  warnes

	* R/make.contrasts.R, man/make.contrasts.Rd: - Moved make.contrasts
	  to a separate file.
	  - Enhanced make contrasts to better label contrast matrix, to
	  give
	  how.many a default value, and to coerce vectors into row
	  matrixes.
	  - Added help page for make.contrasts.
	  - Added link from contrasts.lm seealso to make.contrasts.

2002-10-29 19:29  warnes

	* R/fast.prcomp.R, man/fast.prcomp.Rd: Initial checkin for
	  fast.prcomp() and fast.svd().

2002-09-26 12:11  warnes

	* man/glh.test.Rd: - Added note and example code to illustrate how
	  to properly compute
	  contrasts for the first factor in the model.

2002-09-24 19:12  warnes

	* R/glh.test.R: - Fixed a typo.

2002-09-23 14:27  warnes

	* man/CrossTable.Rd, man/glh.test.Rd, trunk/gplots/man/barplot2.Rd:
	  - Fixed syntax errors in barplot2.Rd and CrossTable.Rd
	  - Fixed incorrect translation of 'F' (distribution) to 'FALSE' in
	  glh.test.Rd

2002-09-23 13:59  warnes

	* trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  R/ci.R, man/estimable.Rd, man/glh.test.Rd,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/lowess.R, trunk/gplots/R/residplot.R,
	  trunk/gplots/man/bandplot.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
	  trunk/gplots/man/space.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/quantcut.Rd: - Modified all files to include CVS
	  Id and Log tags.

2002-09-23 13:38  warnes

	* R/CrossTable.R, man/CrossTable.Rd, trunk/gplots/R/barplot2.R,
	  trunk/gplots/man/barplot2.Rd, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/combinations.R: - Added CrossTable() and
	  barplot2() code and docs contributed by Marc Schwartz.
	  - Permit combinations() to be used when r>n provided
	  repeat.allowed=TRUE
	  - Bumped up version number

2002-08-01 19:37  warnes

	* R/ci.R, man/ci.Rd, man/estimable.Rd, man/glh.test.Rd,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/wapply.R,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/running.R: - Corrected
	  documentation mismatch for ci, ci.default.
	  
	  - Replaced all occurences of '_' for assignment with '<-'.
	  
	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with
	  the spelled out version.
	  
	  - Updaded version number and date.

2002-04-09 00:51  warneg

	* trunk/gdata/R/rename.vars.R, trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/reorder.Rd,
	  R/ci.R, R/estimable.R, R/glh.test.R, man/glh.test.Rd,
	  trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/plot.lm.R,
	  trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/space.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/space.Rd,
	  trunk/gplots/man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/combinations.R, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/running.Rd: Checkin for version 0.5.3

2002-03-26 21:22  warneg

	* trunk/gdata/man/reorder.Rd, R/ci.R, R/glh.test.R, man/ci.Rd,
	  man/glh.test.Rd, trunk/gplots/R/lowess.R,
	  trunk/gplots/man/lowess.Rd: - Changed methods to include '...' to
	  match the generic.
	  - Updated for version 0.5.1

2002-03-26 15:30  warneg

	* man/glh.test.Rd: Removed incorrect link to 'contrast' from
	  seealso.

2002-02-20 20:09  warneg

	* trunk/gdata/man/rename.vars.Rd, man/ci.Rd, man/estimable.Rd,
	  man/glh.test.Rd, trunk/gplots/man/lowess.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/space.Rd: Minor
	  changes, typo and formatting fixes.

2002-01-17 23:51  warneg

	* man/estimable.Rd: - Fixed errror in last example by adding
	  'conf.int' parameter to
	  'estimable' call.

2002-01-17 23:42  warneg

	* R/glh.test.R: - Fixed typo in code that resulted in an syntax
	  error.

2002-01-10 17:35  warneg

	* R/glh.test.R: - print.glh.test() was using cat() to printing the
	  call. This didn't work and
	  generated an error.

2001-12-19 20:06  warneg

	* man/glh.test.Rd: - Fixed display of formulae.
	  - Added description of return value

2001-12-19 20:05  warneg

	* R/glh.test.R: - Removed extra element of return object.

2001-12-18 22:14  warneg

	* man/estimable.Rd: - Updated documentation to reflect change of
	  parameters from 'alpha'
	  to 'conf.int', including the new optional status of the
	  confidence
	  intervals.

2001-12-18 22:12  warneg

	* R/estimable.R: - Modified to make confidence intervals optional.
	  Changed 'alpha'
	  parameter giving significance level to 'conf.int' giving
	  confidence
	  level.

2001-12-18 21:36  warneg

	* man/glh.test.Rd: - Added summary.glh.test to alias, usage, and
	  example sections.

2001-12-18 21:34  warneg

	* R/glh.test.R: - Modified to work correctly when obj is of class
	  'aov' by specifying
	  summary.lm instead of summary. This ensures that the summary
	  object
	  has the fields we need.
	  
	  - Moved detailed reporting of results from 'print' to 'summary'
	  function and added a simpler report to 'print'

2001-12-18 21:27  warneg

	* R/estimable.R: - Modified to work correctly when obj is of class
	  'aov' by specifying
	  summary.lm instead of summary. This ensures that the summary
	  object
	  has the fields we need.

2001-12-18 00:45  warneg

	* R/glh.test.R, man/glh.test.Rd: Initial checkin.

2001-12-17 18:59  warneg

	* man/estimable.Rd: - Fixed spelling errors.

2001-12-17 18:52  warneg

	* man/estimable.Rd: - Fixed the link to contrasts.lm.
	  - Rephrased title/description to be more clear.

2001-12-10 19:35  warneg

	* man/estimable.Rd: Renamed 'contrsts.coeff.Rd' to 'estimable.Rd'
	  corresponding to function rename.

2001-12-10 19:26  warneg

	* R/estimable.R: renamed from contrast.coeff.R to estimable.R
	  (incorrectly via contrast.lm.R)

2001-12-07 19:50  warneg

	* man/ci.Rd: - Added text noting that lme is now supported.

2001-12-07 19:19  warneg

	* R/ci.R: - Fixed typo: DF column was being filled in with p-value.

2001-12-07 18:49  warneg

	* R/ci.R: - Added ci.lme method to handle lme objects.

2001-10-16 23:15  warneg

	* man/ci.Rd, trunk/gplots/man/wapply.Rd: Fixed unbalanced brace.

2001-08-25 05:52  warneg

	* man/ci.Rd: - Added CVS header.
	  - Added my email address.

2001-05-30 13:23  warneg

	* ., R, R/ci.R, man, man/ci.Rd, trunk/gplots, trunk/gplots/R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/man,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/plotCI.Rd,
	  trunk/gplots/man/plotmeans.Rd, trunk/gregmisc,
	  trunk/gregmisc/DESCRIPTION: Initial revision

