2005-08-31 12:27  nj7w (Nitin Jain)

	* DESCRIPTION: Added DESCRIPTION file

2005-08-31 12:26  nj7w (Nitin Jain)

	* DESCRIPTION.in: removed DESCRIPTION.in

2005-07-11 17:35  nj7w (Nitin Jain)

	* R/CrossTable.R, man/CrossTable.Rd: Revision based on Marc
	  Schwartz's suggestions: 1) Added 'dnn' argument to enable
	  specification of dimnames as per table() 2) Corrected bug in SPSS
	  output for 1d table, where proportions were being printed and not
	  percentages ('%' output)

2005-06-09 10:20  nj7w (Nitin Jain)

	* R/ci.R, R/coefFrame.R, R/estimable.R, R/fast.prcomp.R,
	  R/fit.contrast.R, R/glh.test.R, R/make.contrasts.R,
	  man/CrossTable.Rd, man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd,
	  man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
	  man/make.contrasts.Rd: Updating the version number, and various
	  help files to synchronize splitting of gregmisc bundle in 4
	  individual components.

2005-06-09 10:13  nj7w (Nitin Jain)

	* R/CrossTable.R: Updates by Marc Schwartz: CrossTable:

	  # Revision 2.0 2005/04/27 # Added 'format = "d"' to all table
	  count output # so that large integers do not print in #
	  scientific notation

2005-05-13 14:59  nj7w (Nitin Jain)

	* man/CrossTable.Rd: 1) Using dQuote.ascii function in read.xls as
	  the new version of dQuote doesn't work proprly with UTF-8 locale.
	  2) Modified CrossTable.Rd usage in gmodels 3) Modified heatmap.2
	  usage in gplots.

2005-05-11 09:51  warnes

	* DESCRIPTION.in, NAMESPACE: Add dependency on gdata::frameApply.

2005-03-31 15:32  tag release_2_0_5

2005-03-31 15:32  tag release_2_0_6

2005-03-31 15:32  warnes

	* NAMESPACE: Add ceofFrame function to NAMESPACE

2005-03-31 14:05  warnes

	* man/coefFrame.Rd: coefFrame example needs to properly load ELISA
	  data from gtools package

2005-03-31 13:31  warnes

	* R/CrossTable.R, man/CrossTable.Rd, man/ci.Rd, man/estimable.Rd,
	  man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
	  man/make.contrasts.Rd: Ensure that each file has $Id: ChangeLog,v 1.1 2005/09/02 23:09:35 nj7w Exp $ header, and
	  no $Log: ChangeLog,v $
	  no Revision 1.1  2005/09/02 23:09:35  nj7w
	  no Added ChangeLog
	  no

2005-03-31 13:30  warnes

	* R/coefFrame.R, man/coefFrame.Rd: Add coefFrame() function
	  contributed by Jim Rogers

2005-01-18 14:53  warnes

	* R/CrossTable.R: Removed Windows Line Endings

2005-01-14 16:40  nj7w (Nitin Jain)

	* man/CrossTable.Rd: Updated the manual to reflect prop.chisq
	  change in its R file.

2005-01-14 14:14  warnes

	* R/CrossTable.R: Nitin added display of the Chisquare contribution
	  of each cell, as suggested by Greg Snow.

2005-01-12 15:50  warnes

	* DESCRIPTION.in: Add dependency on R 1.9.0+ to prevent poeple from
	  installing on old versions of R which don't support namespaces.

2004-12-23 14:32  nj7w (Nitin Jain)

	* R/CrossTable.R, man/CrossTable.Rd: Split the function
	  print.CrossTable.vector in two parts - for SAS behaiour and SPSS
	  behaviour. Also put the code of printing statistics in a function
	  'print.statistics'

2004-12-21 17:38  warnes

	* R/CrossTable.R: Added & extended changes made by Nitin to
	  implement 'SPSS' format, as suggested by Dirk Enzmann
	  <dirk.enzmann@jura.uni-hamburg.de>.

2004-09-30 17:03  warneg

	* man/glh.test.Rd: Fix typos.

2004-09-27 17:01  tag rel_2_0_0

2004-09-27 17:01  warneg

	* DESCRIPTION, DESCRIPTION.in: Updated to pass R CMD check.

2004-09-03 18:44  warneg

	* man/fit.contrast.Rd: Add explicit package to call to quantcut in
	  example.

2004-09-03 13:27  warneg

	* DESCRIPTION, NAMESPACE, R/CrossTable.R, R/ci.R, R/estimable.R,
	  R/fast.prcomp.R, R/fit.contrast.R, R/glh.test.R,
	  R/make.contrasts.R, man/estimable.Rd, man/fit.contrast.Rd,
	  man/glh.test.Rd, man/make.contrasts.Rd: initial bundle checkin

2004-09-02 13:14  tag initial

2004-09-02 13:14  warneg

	* DESCRIPTION, DESCRIPTION.in, NAMESPACE: Initial revision

2004-09-02 13:14  warneg

	* DESCRIPTION, DESCRIPTION.in, NAMESPACE: [no log message]

2004-05-24 22:57  tag rel_1_11_0

2004-05-24 22:57  tag rel_1_11_1

2004-05-24 22:57  tag rel_1_11_2

2004-05-24 22:57  warnes

	* R/CrossTable.R, man/CrossTable.Rd: Updates from Mark Schwartz.

2004-04-13 07:41  tag gregmisc_0_10_2

2004-04-13 07:41  warnes

	* man/estimable.Rd: Fix latex warning: it doesn't like double
	  subscripts.

2004-03-26 17:28  warnes

	* man/fast.prcomp.Rd: Reflect movement of code from  'mva' package
	  to 'stats' in R 1.9.0.

2004-03-25 15:09  warnes

	* R/estimable.R, man/estimable.Rd: - Estimable was reporting
	  sqrt(X^2) rather than X^2 in the output.  - Provide latex math
	  markup for linear algebra expressions in help text.  - Other
	  clarifications in help text

2004-03-25 13:17  warnes

	* R/estimable.R, man/estimable.Rd: Add enhancements to estimable()
	  provided by Sren Hjsgaard \email{sorenh@agrsci.dk}:

	    I have made a modified version of the function [..] which
	    1) also works on geese and gee objects and
	    2) can test hypotheses af the forb L * beta = beta0 both as a
	    single Wald test and row-wise for each row in L.

2003-11-17 16:40  tag gregmisc_0_8_9

2003-11-17 16:40  tag rel_0_8_7

2003-11-17 16:40  tag rel_0_8_8

2003-11-17 16:40  warnes

	* R/fit.contrast.R:
	  - Fix incorrect handling of glm objects by fit.contrast, as
	  reported   by Ulrich Halekoh, Phd <ulrich.halekoh@agrsci.dk>.

	  - Add regression test code to for this bug.

2003-08-06 23:49  warnes

	* R/ci.R: - Fixed incorrect denominator in standard error for mean
	  in ci.default.

2003-04-22 13:24  tag rel_0_8_4

2003-04-22 13:24  tag rel_0_8_5

2003-04-22 13:24  warnes

	* R/fit.contrast.R:
	  - the variable 'df' was used within the lme code section
	  overwriting	the argument 'df'.

2003-03-12 12:58  tag rel_0_8_3

2003-03-12 12:58  warnes

	* man/fit.contrast.Rd:
	  - Fixed a typo in the example - Added to lme example

2003-03-07 10:48  tag rel_0_8_2

2003-03-07 10:48  warnes

	* R/fast.prcomp.R:
	  - Minor changes to code to allow the package to be provided as an
	  S-Plus chapter.

2003-01-30 16:53  tag rel_0_8_0

2003-01-30 16:53  warnes

	* R/fit.contrast.R, man/fit.contrast.Rd:
	  - Renamed 'contrast.lm' to 'fit.contrast'.  This new name is more
	    descriptive and makes it easier to create and use methods for
	  other   classes, eg lme.

	  - Enabled fit.contrast for lme object now that Doug Bates has
	  provided   the necessary support for contrasts in the nlme
	  package.

	  - New contrast.lm function which generates a 'depreciated'
	  warning and	calls fit.contrast

	  - Updated help text to match changes.

2003-01-30 16:41  warnes

	* R/CrossTable.R, man/CrossTable.Rd:
	  - Removed argument 'correct' and now print separate corrected
	  values   for 2 x 2 tables.  - Added arguments 'prop.r', 'prop.c'
	  and 'prop.t' to toggle printing   of row, col and table
	  percentages. Default is TRUE.  - Added argument 'fisher' to
	  toggle fisher exact test. Default is	 FALSE.  - Added McNemar
	  test to statistics and argument 'mcnemar' to toggle	test.
	  Default is FALSE.  - Added code to generate an invisible return
	  list containing table   counts, proportions and the results of
	  the appropriate statistical tests.

2003-01-30 09:58  warnes

	* R/make.contrasts.R:
	  - Added explicit check to ensure that the number of specified
	  contrasts is less than or equal to the ncol - 1.  Previously,
	  this	 failed with an obtuse error message when the contrast
	  matrix had row   names, and silently dropped contrasts over
	  ncol-1.

2002-11-04 09:13  tag rel_0_7_5

2002-11-04 09:13  warnes

	* R/CrossTable.R:
	  - Moved fisher.test() to after table is printed, so that table is
	  still printed in the event that fisher.test() results in
	  errors.

2002-10-29 18:06  tag rel_0_7_3

2002-10-29 18:06  warnes

	* R/fast.prcomp.R, man/fast.prcomp.Rd:
	  - Fixes to fast.svd to make it actually work.  - Updates to man
	  page to fix mistmatches between code and docs and to	 fix
	  warnings.

2002-10-29 18:00  warnes

	* R/make.contrasts.R, man/make.contrasts.Rd:
	  - Moved make.contrasts to a separate file.  - Enhanced make
	  contrasts to better label contrast matrix, to give   how.many a
	  default value, and to coerce vectors into row matrixes.  - Added
	  help page for make.contrasts.  - Added link from contrasts.lm
	  seealso to make.contrasts.

2002-10-29 14:29  warnes

	* R/fast.prcomp.R, man/fast.prcomp.Rd: Initial checkin for
	  fast.prcomp() and fast.svd().

2002-09-26 08:11  tag rel_0_7_2

2002-09-26 08:11  warnes

	* man/glh.test.Rd: - Added note and example code to illustrate how
	  to properly compute	contrasts for the first factor in the
	  model.

2002-09-24 15:12  tag rel_0_7_0

2002-09-24 15:12  warnes

	* R/glh.test.R:
	  - Fixed a typo.

2002-09-23 10:27  tag rel_0_6_0

2002-09-23 10:27  warnes

	* man/: CrossTable.Rd, glh.test.Rd:
	  - Fixed syntax errors in barplot2.Rd and CrossTable.Rd - Fixed
	  incorrect translation of 'F' (distribution) to 'FALSE' in
	  glh.test.Rd

2002-09-23 09:59  warnes

	* R/ci.R, man/estimable.Rd, man/glh.test.Rd: - Modified all files
	  to include CVS Id and Log tags.

2002-09-23 09:38  warnes

	* R/CrossTable.R, man/CrossTable.Rd:
	  - Added CrossTable() and barplot2() code and docs contributed by
	  Marc Schwartz.  - Permit combinations() to be used when r>n
	  provided repeat.allowed=TRUE - Bumped up version number

2002-08-01 15:37  tag rel_0_5_5

2002-08-01 15:37  warnes

	* R/ci.R, man/ci.Rd, man/estimable.Rd, man/glh.test.Rd:
	  - Corrected documentation mismatch for ci, ci.default.

	  - Replaced all occurences of '_' for assignment with '<-'.

	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with	 the spelled out version.

	  - Updaded version number and date.

2002-04-08 20:51  tag rel_0_5_3

2002-04-08 20:51  tag rel_0_5_4

2002-04-08 20:51  warneg

	* R/ci.R, R/estimable.R, R/glh.test.R, man/glh.test.Rd:
	  Checkin for version 0.5.3

2002-03-26 16:22  tag rel_0_5_1

2002-03-26 16:22  warneg

	* R/ci.R, R/glh.test.R, man/ci.Rd, man/glh.test.Rd:
	  - Changed methods to include '...' to match the generic.  -
	  Updated for version 0.5.1

2002-03-26 10:30  warneg

	* man/glh.test.Rd: Removed incorrect link to 'contrast' from
	  seealso.

2002-02-20 15:09  warneg

	* man/: ci.Rd, estimable.Rd, glh.test.Rd:
	  Minor changes, typo and formatting fixes.

2002-01-17 18:51  warneg

	* man/estimable.Rd:
	  - Fixed errror in last example by adding 'conf.int' parameter to
	  'estimable' call.

2002-01-17 18:42  warneg

	* R/glh.test.R:
	  - Fixed typo in code that resulted in an syntax error.

2002-01-10 12:35  warneg

	* R/glh.test.R:
	  - print.glh.test() was using cat() to printing the call.  This
	  didn't work and generated an error.

2001-12-19 15:06  warneg

	* man/glh.test.Rd:
	  - Fixed display of formulae.	- Added description of return value

2001-12-19 15:05  warneg

	* R/glh.test.R:
	  - Removed extra element of return object.

2001-12-18 17:14  warneg

	* man/estimable.Rd:
	  - Updated documentation to reflect change of parameters from
	  'alpha'   to 'conf.int', including the new optional status of the
	  confidence   intervals.

2001-12-18 17:12  warneg

	* R/estimable.R:
	  - Modified to make confidence intervals optional.  Changed
	  'alpha'   parameter giving significance level to 'conf.int'
	  giving confidence   level.

2001-12-18 16:36  warneg

	* man/glh.test.Rd:
	  - Added summary.glh.test to alias, usage, and example sections.

2001-12-18 16:34  warneg

	* R/glh.test.R: - Modified to work correctly when obj is of class
	  'aov' by specifying	summary.lm instead of summary.	This
	  ensures that the summary object   has the fields we need.

	  - Moved detailed reporting of results from 'print' to 'summary'
	  function and added a simpler report to 'print'

2001-12-18 16:27  warneg

	* R/estimable.R:
	  - Modified to work correctly when obj is of class 'aov' by
	  specifying   summary.lm instead of summary.  This ensures that
	  the summary object   has the fields we need.

2001-12-17 19:43  warneg

	* R/glh.test.R, man/glh.test.Rd:
	  Initial checkin.

2001-12-17 13:59  tag rel_0_5_0

2001-12-17 13:59  warneg

	* man/estimable.Rd:
	  - Fixed spelling errors.

2001-12-17 13:52  warneg

	* man/estimable.Rd:
	  - Fixed the link to contrasts.lm.  - Rephrased title/description
	  to be more clear.

2001-12-10 14:35  warneg

	* man/estimable.Rd: Renamed 'contrsts.coeff.Rd' to 'estimable.Rd'
	  corresponding to function rename.

2001-12-10 14:26  warneg

	* R/estimable.R: renamed from contrast.coeff.R to estimable.R
	  (incorrectly via contrast.lm.R)

2001-12-07 14:50  warneg

	* man/ci.Rd: - Added text noting that lme is now supported.

2001-12-07 14:19  warneg

	* R/ci.R: - Fixed typo:  DF column was being filled in with
	  p-value.

2001-12-07 13:49  warneg

	* R/ci.R: - Added ci.lme method to handle lme objects.

2001-10-16 19:14  warneg

	* man/ci.Rd:
	  Fixed unbalanced brace.

2001-08-25 01:52  warneg

	* man/ci.Rd: - Added CVS header.  - Added my email address.

2001-05-30 09:23  tag null

2001-05-30 09:23  warneg

	* R/ci.R, man/ci.Rd:
	  Initial CVS import

2001-05-30 09:23  warneg

	* R/ci.R, man/ci.Rd: Initial revision

