762068469679e5ab0132611f78caffb1 *DESCRIPTION
61676aa13d4f3df5726acec7fc49c7e8 *NAMESPACE
c7500c572550b09513c381c613b114b9 *R/GUI_geneHapR.R
18d9e2e56ff1b3ecc256fe6980db101b *R/IO.R
1366093c88fe120a62d420c552470e62 *R/adj_addINFO.R
985285ab0108c99a7625be6b334c450b *R/adj_setATGas0.R
41ef455a5999f7a38228d001d2c3170d *R/anno.R
9f7c9b22e42bad40ff81eab7e5f8f34e *R/data.R
d0e5392361b87efc1eaf8e7e1d1c124a *R/filter.R
b20c706cf58c612688b91eceaff595b0 *R/filter_preprocessbigVCF.R
7010013036d2162c90a9c993843d4976 *R/geneHapR-package.R
79165656a9271579ef3c8ae49bcb4066 *R/getGenePOS.R
61bf9f0c73f618f7a22855f8747b21aa *R/hap2hmp.R
f2f75717346715156e7e3b7c9ec76d98 *R/hap2plink.R
f4c17ad23c72b3abc1d6b367c31d2573 *R/hap2seqs.R
2d562af5b855913258b23267d4440e6d *R/hap2table.R
300ca3c5923d38c0b62b939ca1f1e979 *R/hap2vcf.R
161015bb08a6cacd3bfeb858900e4e4a *R/print.R
e42ce222438ee394f16244f25e80067c *R/vis_LDheatmap.R
9e84844c1079f3e100a6ef8060bab3b6 *R/vis_functionalSites.R
4f18eabe39565880d9042c0a2a36a376 *R/vis_geography.R
232359043b10ee9209276b9e5715e3b0 *R/vis_hapVisualization.R
88bb2a8b6eb03f46507f083ff780a58e *R/vis_network.R
7dcedad714ad7298c5f656366eba9a7c *R/vis_phenos.R
2deaac340ae9432abdb903077751d4fa *R/zzz.R
afbe4209b3bb961ba3e41cbfe79ea507 *build/partial.rdb
0413a904ecd401a73e3f73ac040f4210 *build/vignette.rds
1a14aba04a1fb7309e156edf1a61fd5d *data/geneHapR_test.RData
bb14b3d37c93058e64a312de07b5ae67 *inst/doc/Introduction_of_geneHapR.R
6414ec0d94b802c005a42f3f46f313bd *inst/doc/Introduction_of_geneHapR.Rmd
5f8f244d278b8268f7897a46ed921842 *inst/doc/Introduction_of_geneHapR.html
c9cbcc7ee10eae934be180b12e606b9d *inst/doc/geneHapR_data.R
b7f8ade0087f7f487fca729679a69720 *inst/doc/geneHapR_data.Rmd
5e262e7a706336beac0e012e05068ca1 *inst/doc/geneHapR_data.html
21a92d3de2d47e9494e185822985ca0c *inst/doc/workflow.Rmd
4a433bb0c9a85ee608ef70bd6a56d908 *inst/doc/workflow.html
54e4424a03c7f85ee0fbf857ed1f5a8c *inst/extdata/annotation.bed6
feebd3cd4d1fdd213e5cd52296f21f57 *inst/extdata/annotation.gff
89c1a53853dbdbaa3023850d29f2db06 *inst/extdata/filtered1.vcf.gz
b9a8dd355cceab228b65286a3e66f1a9 *inst/extdata/filtered2.vcf.gz
45156d23f32efd19ad9162e94c5a24ce *inst/extdata/filtered3.vcf.gz
c37555b35649bb03680b9c54ff4c9f11 *inst/extdata/seqs.fa
4fe4437e1dffb670be054339e581d459 *inst/extdata/snp3kvars-CHR8-25947258-25951166-plink.map
e6099c2938d602f0474ea133e282749a *inst/extdata/snp3kvars-CHR8-25947258-25951166-plink.ped
9ee500aa06b91a6f1d0215bcd77fb8b4 *inst/extdata/var.vcf.gz
d068dbc922826b2297b2490f18766193 *man/DataSet.Rd
1f8dda2cdbbd8e1764528b801e53ff12 *man/LDheatmap.Rd
216d29cd712a2c645ec9a9ac90d760d5 *man/SetATGas0.Rd
84f0a18a4532a89910aef842bc1e942d *man/addINFO.Rd
8964bfc419662685f9cd74388d064f45 *man/addPromoter.Rd
aa14b123d6d64a889d1d56d516d9c46b *man/ashaplotype.Rd
cbcd37c611f7c5bdc484574ea3daed92 *man/displayVarOnGeneModel.Rd
8353ece8fb6a64a27f628686aad467d9 *man/filterLargeVCF.Rd
6cdf27ee5c8e39819d523b2e65541e28 *man/filter_hap.Rd
11acb4b687d30126986874fd306fcdaf *man/filter_hmp.Rd
236589a28c00c5a08df38fc41c3b5bb2 *man/filter_plink.pedmap.Rd
6643bfcc51b855693ca017ad2bee583c *man/filter_table.Rd
78bcee3c371a42c05654da0c39a58bad *man/filter_vcf.Rd
ba05367462e4f50968453c3819065470 *man/geneHapR-package.Rd
3bfb3189dcdbc766fe97f3e36fe43997 *man/getGenePOS.Rd
2f00b09a9e9d604cf08a5498637f139a *man/getGeneRanges.Rd
ebad5be144881a98d3283d7e13313be4 *man/hap2hmp.Rd
f228170a5a29ec1d28aa0f3d5cdd663c *man/hapDistribution.Rd
6cb185a9b16bc6556dbdc50e20069c2d *man/hapVsPheno.Rd
e54c1b19be99b9847d8a5abf7ed732de *man/hapVsPhenos.Rd
d6176228a743b583869a7a75d24a28dd *man/hap_summary.Rd
6cb559f6764455f7b3241e04b95ef516 *man/import_AccINFO.Rd
bcb3efcf478200cd61aac7c14da6dc36 *man/import_MultipleAlignment.Rd
0573afef16979f6ed4ec5c011fe6ba8a *man/import_bed.Rd
9c016011632d0f377faa754427ae4645 *man/import_gff.Rd
04fa8fcbca81f0d633924ccfa05df1da *man/import_hap.Rd
087f8d9d82fde1b1d036fb50d51d9e38 *man/import_plink.pedmap.Rd
51e94c8f46e96d3ecd3913a77e1ce273 *man/import_seqs.Rd
b2b791da522dca4c116790183fc6c6aa *man/import_vcf.Rd
6857ac4109e2b73050d38750814595d6 *man/network.Rd
bbd02c83ff4bc144d8ee8a1db31320dc *man/plink.pedmap2hap.Rd
6983fcab1417dbd2bca7a7ecafe2da7e *man/plotEFF.Rd
46e54cc3839c821354b2cf7b29f95034 *man/plotHapNet.Rd
72c29e4f8df348fb4db2e283dd1fb72a *man/plotHapTable.Rd
20ce691927c0c562e013e2e4cb95c5f8 *man/seqs2hap.Rd
92e85955a164b70519bce02b4d6a67e9 *man/siteEFF.Rd
ef51811732c9e472f5f1ce7eea07a95a *man/table2hap.Rd
623cb775e855436290189b8bdb0bb849 *man/vcf2hap.Rd
8a3d3cbe0c513e7ae0d248b977f1c8a4 *man/windows/GUI_geneHapR.Rd
41398211495ab75e9d1eace31a53720c *man/write.hap.Rd
73ac89414e5d4fb3760da6d90e5d3183 *vignettes/FigS2.png
6414ec0d94b802c005a42f3f46f313bd *vignettes/Introduction_of_geneHapR.Rmd
b7f8ade0087f7f487fca729679a69720 *vignettes/geneHapR_data.Rmd
5eb46e5b0dbe790ff9a17a500a6a029d *vignettes/geneHapR_workflow.png
21a92d3de2d47e9494e185822985ca0c *vignettes/workflow.Rmd
