c53c41705140f1b4af417e4767495d67 *DESCRIPTION
7ce8b01bb1447e2dce29e1648ef549cb *NAMESPACE
7720f7f4e657893a5874e937c3246c06 *R/IO.R
1366093c88fe120a62d420c552470e62 *R/addINFO.R
9f7c9b22e42bad40ff81eab7e5f8f34e *R/data.R
ff25ebd19e28aa6cdc835e7a4ab74aac *R/filtor.R
efd78a56e207f34b0487f115216f71c8 *R/functionalSites.R
7010013036d2162c90a9c993843d4976 *R/geneHapR-package.R
4f18eabe39565880d9042c0a2a36a376 *R/geography.R
79165656a9271579ef3c8ae49bcb4066 *R/getGenePOS.R
9a4cb3d4838918efac2e3ea8742f8402 *R/hap2hmp.R
19b382df14d6cca4fd04560058a1256c *R/hapVisualization.R
e33af2eeae933762fd86c18e38dc91db *R/network.R
7239e254b8a0f75359e357a2bcaa198c *R/phenos.R
a8968e71d0237aa9114b5b86aaf74cbd *R/plink2hap.R
b20c706cf58c612688b91eceaff595b0 *R/preprocessbigVCF.R
161015bb08a6cacd3bfeb858900e4e4a *R/print.R
4a1ad76ad89760838f9345aaa60443be *R/seqs2hap.R
985285ab0108c99a7625be6b334c450b *R/setATGas0.R
8d2d5b1e2c86885a376f879c44db13c8 *R/table2hap.R
6d644046a5a1cce5393b9ba1d7cee632 *R/vcf2hap.R
2deaac340ae9432abdb903077751d4fa *R/zzz.R
afbe4209b3bb961ba3e41cbfe79ea507 *build/partial.rdb
0413a904ecd401a73e3f73ac040f4210 *build/vignette.rds
befaab5b1e3c73bf8bbfdb6b8557721a *data/geneHapR_test.RData
e5c724d4ce59a878bbe5deab43afedfd *inst/doc/Introduction_of_geneHapR.R
f9b2b2226b2d883729753a01c2eb4a80 *inst/doc/Introduction_of_geneHapR.Rmd
37ddd6fbb5b289108f249300f467d6d7 *inst/doc/Introduction_of_geneHapR.html
c9cbcc7ee10eae934be180b12e606b9d *inst/doc/geneHapR_data.R
b7f8ade0087f7f487fca729679a69720 *inst/doc/geneHapR_data.Rmd
adb623aaee644592c40222b26469ac4a *inst/doc/geneHapR_data.html
21a92d3de2d47e9494e185822985ca0c *inst/doc/workflow.Rmd
0cc8728739c16e86aeb8054aa847c14f *inst/doc/workflow.html
54e4424a03c7f85ee0fbf857ed1f5a8c *inst/extdata/annotation.bed6
feebd3cd4d1fdd213e5cd52296f21f57 *inst/extdata/annotation.gff
89c1a53853dbdbaa3023850d29f2db06 *inst/extdata/filtered1.vcf.gz
b9a8dd355cceab228b65286a3e66f1a9 *inst/extdata/filtered2.vcf.gz
45156d23f32efd19ad9162e94c5a24ce *inst/extdata/filtered3.vcf.gz
c37555b35649bb03680b9c54ff4c9f11 *inst/extdata/seqs.fa
4fe4437e1dffb670be054339e581d459 *inst/extdata/snp3kvars-CHR8-25947258-25951166-plink.map
e6099c2938d602f0474ea133e282749a *inst/extdata/snp3kvars-CHR8-25947258-25951166-plink.ped
9ee500aa06b91a6f1d0215bcd77fb8b4 *inst/extdata/var.vcf.gz
d068dbc922826b2297b2490f18766193 *man/DataSet.Rd
59203a0874b67d161b6e38274b9ba0a7 *man/SetATGas0.Rd
9e4e28cdc729a429262757c42c84d213 *man/addINFO.Rd
c5c4da5c9c39b0e4eacc799e8d4094c4 *man/ashaplotype.Rd
872532b6d93584e70754116c3440c23f *man/displayVarOnGeneModel.Rd
e6d809fcbbc12e17d9fd3bd142f2ec3b *man/filterLargeVCF.Rd
b6544dbb5c306d189b837b23279d135f *man/filter_hap.Rd
65495ae534c9676e6d57f353572574bd *man/filter_plink.pedmap.Rd
462cc45d239291bc187792d8f4154502 *man/filter_vcf.Rd
ba05367462e4f50968453c3819065470 *man/geneHapR-package.Rd
3bfb3189dcdbc766fe97f3e36fe43997 *man/getGenePOS.Rd
2f00b09a9e9d604cf08a5498637f139a *man/getGeneRanges.Rd
d85401f0aa5b9052d834edb13d6a522e *man/hap2hmp.Rd
8db256b0eeedda83412af5f9f6969d24 *man/hapDistribution.Rd
7f4294c42d3f71dd7c86a9a5469c2120 *man/hapVsPheno.Rd
7d9db134c086edb3e4a10385a43091dc *man/hapVsPhenos.Rd
d4b6f2bd1c8f35e091c51b061932d404 *man/hap_summary.Rd
6cb559f6764455f7b3241e04b95ef516 *man/import_AccINFO.Rd
bcb3efcf478200cd61aac7c14da6dc36 *man/import_MultipleAlignment.Rd
0573afef16979f6ed4ec5c011fe6ba8a *man/import_bed.Rd
9c016011632d0f377faa754427ae4645 *man/import_gff.Rd
04fa8fcbca81f0d633924ccfa05df1da *man/import_hap.Rd
3769f7a624f2ffce755aa21ab3d88e72 *man/import_plink.pedmap.Rd
51e94c8f46e96d3ecd3913a77e1ce273 *man/import_seqs.Rd
b2b791da522dca4c116790183fc6c6aa *man/import_vcf.Rd
afdba97ffb753cfaac7486c67b3d4855 *man/network.Rd
9bf6c6f858020b1a9f84ea0a7498768c *man/plink.pedmap2hap.Rd
f25ccd86c62993d134b2ea4379ed3e7c *man/plotEFF.Rd
3b09206a3ce407aa28c0c4fcc4693db8 *man/plotHapNet.Rd
62725d32abf388f776e6c96dc9812d0e *man/plotHapTable.Rd
c13484a53e0142ffa34bbe3e8dff34df *man/seqs2hap.Rd
c5ea5ec9fabfa2398982e70d9ee282ed *man/siteEFF.Rd
dc66451c4a1e167b348dfde09ff22289 *man/table2hap.Rd
58c9773309f2f132279e5ef3217486bd *man/vcf2hap.Rd
41398211495ab75e9d1eace31a53720c *man/write.hap.Rd
f9b2b2226b2d883729753a01c2eb4a80 *vignettes/Introduction_of_geneHapR.Rmd
b7f8ade0087f7f487fca729679a69720 *vignettes/geneHapR_data.Rmd
5eb46e5b0dbe790ff9a17a500a6a029d *vignettes/geneHapR_workflow.png
21a92d3de2d47e9494e185822985ca0c *vignettes/workflow.Rmd
