be1fad259e85a052a6954bc2f91bb1a7 *DESCRIPTION
2870c3eac9343e6a70c9a913e29669cf *NAMESPACE
eb3d8293dcfea68f20d99d8152e6f4e4 *R/addColumn.R
04855a38c0200221d3315cf4b03641d6 *R/assignMutations.R
e1204e031a85a4119bd8d97934917e55 *R/assignQuantityToMutation.R
0fa8f9586ff866a063de7fa8354bdbc1 *R/assignQuantityToSP.R
9fe917d487051d4b37eee7cb269bb183 *R/buildMultiSamplePhylo.R
2c7dacc847b35c62a765d53bea293f7c *R/buildPhylo.R
3ff7f88ce4b2289822a1b80e010bb7c6 *R/cellfrequency_pdf.R
8140efed4f9846ee05a1cf4368090f91 *R/clusterCellFrequencies.R
6bd3a9c451dab07f9586b75be34839f1 *R/computeCellFrequencyDistributions.R
f7bf2d6192a657f1850cca805ddf220b *R/onLoad.R
996ea85a6c9a22c5461d9b68f4ec285f *R/plotSPs.R
54bd59205e05cc47cf37820ae844466b *R/runExPANdS.R
ab9b341bfd4c3b08d33af8c497bc1261 *R/sysdata.rda
82132b0f9ff691dac132fbfff1766f49 *build/vignette.rds
664284e0624f9ce0762af69e78b0b03e *data/cbs.rda
e49b6d61d3960c03b775dc15a5b65cc9 *data/simulation.rda
6fb02c3ab0905057bf173dd43c1b8908 *data/snv.rda
cead9f2d19c07d79160b8b5d08eb950a *inst/doc/expands.R
ec01566c18bef2c259a6eeed53dad678 *inst/doc/expands.Rnw
7042c2af58502faf5d03461fd854edb0 *inst/doc/expands.pdf
11db04b858019c53da76bc4569b573f2 *inst/java/expands.jar
4433428a9d9b3b5d77fef3df68ec4d58 *java/Common.java
58240be1d11c5f5f318ef07529255a45 *java/ExPANdS.java
3db9159dc09ac5353f592d6d23aeb509 *man/assignMutations.Rd
dc0a8a7a0aee2f71baf3ea7e5c574e1e *man/assignQuantityToMutation.Rd
3376c6afc182dff6e06514fa5e8620b8 *man/assignQuantityToSP.Rd
8340fbdcbed5f8b9087e1504349e7e2e *man/buildMultiSamplePhylo.Rd
23b27f233843005f350b2e86bb0c5337 *man/buildPhylo.Rd
182bfe9986fe62d975e0cdc4a8baf5f6 *man/cbs.Rd
69736ae2cc5b940996d0a91c21ffc91a *man/cellfrequency_pdf.Rd
4b5b692fb9aaa1622b74d5c536855812 *man/clusterCellFrequencies.Rd
ae9b22141a92069c3598ae4740e1fc8f *man/computeCellFrequencyDistributions.Rd
8c2ddc780cef17e075df05024b3b6afe *man/plotSPs.Rd
a2f8272a907692ff63f0256207acad06 *man/roi.Rd
dcf0f747843424739702c97fd9ad2124 *man/runExPANdS.Rd
1c96eeb865b85a2267119aeb498a9d0b *man/simulation.Rd
31e52065878423e41bbd7827e4c7ef09 *man/snv.Rd
b80785aaa809120eec20fe84f239736d *vignettes/ID_MRD_001_metKidney.cbs
6837b968c578621f982664b6f48beaef *vignettes/ID_MRD_001_metKidney.sps
c433273ed3b6acae84450a565dc14fea *vignettes/ID_MRD_001_metLung.cbs
ee846819b79f1f64b57031d7c0d5c2bb *vignettes/ID_MRD_001_metLung.sps
8e23abaf58395fc8cfcec977ab9d5c6f *vignettes/ID_MRD_001_primPancreas.cbs
503326f1ccccfadb8c22fb1436e8daac *vignettes/ID_MRD_001_primPancreas.sps
ec01566c18bef2c259a6eeed53dad678 *vignettes/expands.Rnw
291e185f5056595af2f5aa27576d8887 *vignettes/expands.bib
