a17fa157ac3264316631365417a08bb8 *DESCRIPTION
8e4d9d270208c5dfbe80eae8c41b87ad *NAMESPACE
808a52915f954e6f918ba31ce76a0f20 *NEWS.md
ef996171c48fd450eb2818129b3511af *R/amr_raw_to_metagenomeseq.R
c8dfff43495c497aa2da37f31a814d84 *R/amr_raw_to_phyloseq.R
9599673ccea2bbae980c1a2edaee2c6e *R/amr_read_taxonomy.R
6d182f2b8ad2ee4b540c626df52a732c *R/data.R
bdecc693b44992fc58bee63bf2b207d7 *R/generate_amr_taxonomy.R
d9d41c66b5807e6ea304ed4afe4e1fa1 *R/generate_wimp_taxonomy.R
e1df3176eaa004069f54b1f260a3bf6b *R/globals.R
7a6cb3c5e8466208159a9b45bd2ef951 *R/read_in_amr_files.R
f6c4dd33e2ac97c93520749e9e002433 *R/read_in_wimp_files.R
f6377a71ab0bf68ff7649ea6a96f670b *R/wimp_raw_to_metagenomeseq.R
c0f185cd8d055134693c0b9c1aa29cbe *R/wimp_raw_to_phyloseq.R
c27612ded8978d6df3bf65b9ed7f062c *README.md
74415034bf357903577b5fab3639ea24 *build/vignette.rds
d520b8d83f25742994afa13b2e5da8bc *data/CARD_taxonomy.RData
d800a6e2373cb8f9092d397ff8129a88 *inst/CITATION
063b03aff19f22056e6802eea7ba7d91 *inst/doc/epi2me2r-vignette.R
55b542f312acced6563254d290283ff5 *inst/doc/epi2me2r-vignette.Rmd
b61dfa2760191d69efc30fb8f50dea62 *inst/doc/epi2me2r-vignette.html
fd9a44aa5661aedd746e361ba86cd358 *inst/epi2me.download.report.jpg
1fef9d2e485c20a3dba6252fa2108b51 *inst/extdata/example_amr_data/arma_288715.csv
8d2c3f352d491cf4d70c3b567bf9c79c *inst/extdata/example_amr_data/arma_288716.csv
14d7a364ddd72ed31367554e5769c5f9 *inst/extdata/example_metadata.csv
2b69cadcc0d2e9c2ee67ed1c393dae8e *inst/extdata/example_wimp_data/324212_1777.csv
3331a4997cbc549d9f6e3dc655e2265c *inst/extdata/example_wimp_data/324212_1778.csv
773701baafc31a6e566e1755b4eae75c *inst/metadata-example.jpg
5bcaa164adb45f8524810bfeaf81475f *man/CARD_taxonomy.Rd
5ebe472367bcd5fa54afb3526d996480 *man/amr_raw_to_metagenomeseq.Rd
a4fa99d313ad5fc2da16e3e9e13add12 *man/amr_raw_to_phyloseq.Rd
01767e62b4ffde6ea3c8bc44096c580c *man/amr_read_taxonomy.Rd
071d7773840f2be306a4cbe91c6256cc *man/epi2me2r.Rd
96e8021603f5c9e7a60ba6a49c0acd03 *man/generate_amr_taxonomy.Rd
3a326641c1429139ce5385ef98cae0ad *man/generate_wimp_taxonomy.Rd
83aa677fb1158e21f3b77857e3c370f6 *man/read_in_amr_files.Rd
9001a34f3d27c2a243248c638abb38a2 *man/read_in_wimp_files.Rd
70b79cccf59992ef62e74f6873dc5abc *man/wimp_raw_to_metagenomeseq.Rd
5dbe6b1bd0106c9c35c2d32cb4186969 *man/wimp_raw_to_phyloseq.Rd
eb050123f6f914b771a82e34f21a74e3 *tests/testthat.R
8653ae0f51a1e90c4418329e352a6323 *tests/testthat/test_amr.R
1e63e8ed319e4bfd1b3e97f88f18ff43 *tests/testthat/test_wimp.R
55b542f312acced6563254d290283ff5 *vignettes/epi2me2r-vignette.Rmd
