# Generated by roxygen2: do not edit by hand

export(biomarker_mcc_analysis)
export(biomarker_synergy_analysis)
export(biomarker_tp_analysis)
export(calculate_mcc)
export(calculate_models_mcc)
export(calculate_models_synergies_fn)
export(calculate_models_synergies_fp)
export(calculate_models_synergies_tn)
export(calculate_models_synergies_tp)
export(construct_network)
export(count_models_that_predict_synergies)
export(filter_network)
export(get_alt_drugname)
export(get_avg_activity_diff_based_on_mcc_clustering)
export(get_avg_activity_diff_based_on_specific_synergy_prediction)
export(get_avg_activity_diff_based_on_synergy_set_cmp)
export(get_avg_activity_diff_based_on_tp_predictions)
export(get_avg_activity_diff_mat_based_on_mcc_clustering)
export(get_avg_activity_diff_mat_based_on_specific_synergy_prediction)
export(get_avg_activity_diff_mat_based_on_tp_predictions)
export(get_avg_link_operator_diff_based_on_specific_synergy_prediction)
export(get_avg_link_operator_diff_based_on_synergy_set_cmp)
export(get_avg_link_operator_diff_mat_based_on_mcc_clustering)
export(get_avg_link_operator_diff_mat_based_on_specific_synergy_prediction)
export(get_avg_link_operator_diff_mat_based_on_tp_predictions)
export(get_biomarkers)
export(get_biomarkers_per_type)
export(get_edges_from_topology_file)
export(get_fitness_from_models_dir)
export(get_link_operators_from_models_dir)
export(get_model_names)
export(get_model_predictions)
export(get_node_colors)
export(get_node_names)
export(get_observed_model_predictions)
export(get_observed_synergies)
export(get_observed_synergies_per_cell_line)
export(get_perf_biomarkers_per_cell_line)
export(get_stable_state_from_models_dir)
export(get_synergy_biomarkers_from_dir)
export(get_synergy_biomarkers_per_cell_line)
export(get_synergy_comparison_sets)
export(get_synergy_scores)
export(get_synergy_subset_stats)
export(get_unobserved_model_predictions)
export(is_comb_element_of)
export(make_barplot_on_models_stats)
export(make_barplot_on_synergy_subset_stats)
export(plot_avg_link_operator_diff_graph)
export(plot_avg_link_operator_diff_graphs)
export(plot_avg_state_diff_graph)
export(plot_avg_state_diff_graph_vis)
export(plot_avg_state_diff_graphs)
export(plot_mcc_classes_hist)
export(print_biomarkers_per_predicted_synergy)
export(print_model_and_drug_stats)
export(update_biomarker_files)
importFrom(Ckmeans.1d.dp,Ckmeans.1d.dp)
importFrom(Ckmeans.1d.dp,ahist)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,text)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,adjacent_vertices)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,induced_subgraph)
importFrom(igraph,plot.igraph)
importFrom(magrittr,"%>%")
importFrom(purrr,flatten_chr)
importFrom(readr,read_tsv)
importFrom(rje,powerSet)
importFrom(usefun,add_row_to_ternary_df)
importFrom(usefun,add_vector_to_df)
importFrom(usefun,get_parent_dir)
importFrom(usefun,get_ternary_class_id)
importFrom(usefun,is_empty)
importFrom(usefun,outersect)
importFrom(usefun,pretty_print_bold_string)
importFrom(usefun,pretty_print_string)
importFrom(usefun,pretty_print_vector_values)
importFrom(usefun,print_empty_line)
importFrom(usefun,save_vector_to_file)
importFrom(utils,combn)
importFrom(utils,read.table)
importFrom(visNetwork,toVisNetworkData)
importFrom(visNetwork,visLegend)
importFrom(visNetwork,visNetwork)
