Package: dnet
Type: Package
Title: Dynamic NETworks via integrative analysis of digitised data in
        terms of network, ontology and evolution
Version: 1.0.0
Date: 2014-4-9
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang <hfang@cs.bris.ac.uk>
Depends: R (>= 3.0.2), igraph, supraHex
Imports: ape, graph, Rgraphviz, Matrix
Suggests: affy, limma
Description: The 'dnet' package is initiated to fill in the need of an open-source tool for digitised data in an integrative manner. More specifically, dnet intends to analyse the biological network whose nodes/genes are associated with digitised information such as expression levels across samples. To help make sense of identified networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific age information in major organisms including human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. In summary, dnet aims to deliver an eye-intuitive tool with rich visuals but less inputs.
URL: http://dnet.r-forge.r-project.org
Collate: 'dGSEA.r' 'dGSEAview.r' 'dGSEAwrite.r' 'visGSEA.r'
        'dPvalAggregate.r' 'dNetInduce.r' 'dBUMfit.r' 'dBUMscore.r'
        'dNetFind.r' 'dNetPipeline.r' 'dNetConfidence.r' 'visNet.r'
        'visNetMul.r' 'visNetReorder.r' 'dNetReorder.r' 'visNetArc.r'
        'visNetCircle.r' 'dRWR.r' 'dContrast.r' 'dCommSignif.r'
        'dSVDsignif.r' 'dFDRscore.r' 'visColormap.r' 'visColoralpha.r'
        'visHeatmap.r' 'visHeatmapAdv.r' 'visTreeBootstrap.r'
        'dDAGinduce.r' 'dDAGreverse.r' 'dDAGroot.r' 'dDAGtip.r'
        'dDAGlevel.r' 'dDAGannotate.r' 'visDAG.r' 'dEnricher.r'
License: GPL-2
biocViews: Bioinformatics
Packaged: 2014-04-09 14:20:43 UTC; hfang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-09 16:46:26
