Package: diversitree
Title: diversitree: comparative phylogenetic analyses of
        diversification
Version: 0.9-7
Date: 2014-02-20
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE and
  ClaSSE by Emma E. Goldberg <eeg@uic.edu>, and BiSSE-ness by Karen
  Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Depends: R (>= 2.10), deSolve (>= 1.7), ape, subplex, methods, Rcpp (>=
        0.10.0)
Suggests: numDeriv, minqa, lubridate, expm, caper, geiger
LinkingTo: Rcpp
RcppModules: diversitree
SystemRequirements: fftw3 (>= 3.1.2), gsl (>= 1.15)
Description: Contains a number of comparative phylogenetic methods,
  mostly focusing on analysing diversification and character
  evolution.  Contains implementations of BiSSE (Binary State
  Speciation and Extinction; Maddison et al. 2007: Syst. Biol. 56:
  701) and its unresolved tree extensions (FitzJohn et al. 2009:
  Syst. Biol. 58: 595), MuSSE (Multiple State Speciation and
  Extinction), QuaSSE (Quantitative State Speciation and Extinction;
  FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE (Geographic State
  Speciation and Extinction; Goldberg et al. 2011: Syst. Biol. 60:
  451), and BiSSE-ness (Magnuson-Ford and Otto 2012: Am. Nat.)
  Other included methods include Markov models of discrete and
  continuous trait evolution and constant rate speciation and
  extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2014-02-20 06:01:22 UTC; rich
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-02-20 07:37:29
