511717d74e4c1351bbbf02500d22159d *DESCRIPTION
e30f9a4aeac462891b3b1e1984e62094 *LICENSE
563841a1958b335edad8eabdb739f7a8 *NAMESPACE
323646fef3d600aafd576ffa1fd594f3 *R/Gibbs_lcm.R
384eef066778d5a0e150dc7d0b97e7e4 *R/MH_tree.R
e14c1dbd30803c83c060f232434aef4f *R/RcppExports.R
49a19fa4ba911332635117e5839fca9e *R/data.R
982077882490edca70df370636d5a858 *R/ddtlcm-package.R
87acc8cc524064846a796c0a0670f4f0 *R/ddtlcm_fit.R
00ad5350adf9a17f71cacb4a2537bb65 *R/initialization.R
90fea442f5aa77a3d125b7d1bd7aa628 *R/loglikehoods.R
7cee55f4f95a99d9e55dd2989d540a7d *R/plot_functions.R
a46ac280e4e042566f81c0b583b3b971 *R/predict.R
ce371b9474821642d61b338cd1f201d1 *R/print_functions.R
54fd8fb04a742ce5f22ad23ef32c263f *R/simulate_DDT_functions.R
8650f89c9d1fa69e2af980d1d6232d6f *R/summary_functions.R
0888c68ce6b4cae049e2f686ecf9da77 *R/utils.R
3064987923a596502ff88586515d2c0c *README.md
38b208a3a4794119eacf9ee9aba778c0 *build/vignette.rds
8d1adaaf289252b6ac401815e9eef673 *data/data_hchs.RData
698e26d551c7cb40596fe9023cc9bbac *data/data_synthetic.RData
1f0e5fe47624b6e9a5c1dbcd3315d349 *data/result_hchs.RData
fc91b9829a29170eeee6ff7d99891662 *inst/K6_test.pdf
a8af623888f006435f1a5cb1959c7749 *inst/REFERENCES.bib
ccff4521e2fe4e33439951ad6afe714a *inst/ddtlcm_output_example.pdf
24c41c52a2e1c16e496e5ac302159791 *inst/ddtlcm_output_example.png
e006995d9500c238a1702b3627b1e668 *inst/ddtlcm_workflow_example.Rmd
699dd74ea6e8fd9c1cc33c254eff2aab *inst/ddtlcm_workflow_example.pdf
a6c1da4072ce297f8e85b2ae0db1f1cd *inst/doc/ddtlcm-demo.R
4d1aa95d5986645c22417f64f0692702 *inst/doc/ddtlcm-demo.Rmd
62de4c8d3dea737ba690f584b6899947 *inst/doc/ddtlcm-demo.html
3a75cecac1b4406a2881accda4108703 *man/H_n.Rd
e11cba963ec0accd610da518bbc8a534 *man/J_n.Rd
7b3c14f15eaa72d5fdf22e84cd372f00 *man/WAIC.Rd
3bd55ac0ef8f0fe88f81636da8f2e5ca *man/a_t_one.Rd
6be8a0486947048b00fbe31e7cccdff3 *man/a_t_two.Rd
5c8741ec8866f17b5ae3affe37330d59 *man/add_leaf_branch.Rd
f50067607c2b7ba1238e12d06e2933d5 *man/add_multichotomous_tip.Rd
ec6489114c0113cfd8c5c9e29d6bf228 *man/add_one_sample.Rd
d2b65e806471c08265f1f14022978c00 *man/add_root.Rd
6529b0a8e48ef04c6345c326a083e65f *man/attach_subtree.Rd
43c46c4f16f58450647c2ea34a2c7427 *man/compute_IC.Rd
a2406d5f9abcd385a9f1031ac132571f *man/create_leaf_cor_matrix.Rd
d4f390b1ae5a201659e6ffe941e7bb55 *man/data_hchs.Rd
0a8e6b63051829fcab83234ec556bdee *man/data_synthetic.Rd
b7ad4e31672b70d4095bf5cd8bf22633 *man/ddtlcm.Rd
9d17967637dadd3bbdc32e49c1eeac5e *man/ddtlcm_fit.Rd
a2833d1dd91b9257fc08e2e313a61acc *man/div_time.Rd
82028b0a4e61ca9adaeef39e55cb67c8 *man/draw_mnorm.Rd
bc43fc235d5cb32fab45655547b5b4e6 *man/exp_normalize.Rd
3839a444a2c37c2648e6b3502270fe42 *man/expit.Rd
f6571590a33036fc2f925153dccb3c83 *man/initialize.Rd
1c49d7039fa021016e2da39aabd216ec *man/initialize_hclust.Rd
2e1c22c04f0e0df7826221ee2845ce04 *man/initialize_poLCA.Rd
8031e18e7f33b0ecf61f85eaf7ab577d *man/initialize_randomLCM.Rd
53cdd9e430daf6fade403fc42a2543aa *man/log_expit.Rd
f738e45ce92330fcd297a8bf7035e00a *man/logit.Rd
bbae941a53598533feaa92d68611cce6 *man/logllk_ddt.Rd
808baf121368d50de288b932206a8749 *man/logllk_ddt_lcm.Rd
bdd5370df758db146bf258c9d5799eff *man/logllk_div_time_one.Rd
f7fb2c90a921f4c78a803d1cf84e80ad *man/logllk_div_time_two.Rd
c5fe981fe5d668bd1166b8191866433c *man/logllk_lcm.Rd
703cade3f2ea5bc2dd491498471a958f *man/logllk_location.Rd
3dc0d420f5493a75683afb427f03cb7c *man/logllk_tree_topology.Rd
e22cc5f9378b9024585bcaace01eb730 *man/plot.summary.ddt_lcm.Rd
19950d2ca2138c8dece8114f99fcb673 *man/plot_tree_with_barplot.Rd
239075d3ae7e9f20370cb914c6ac6eed *man/plot_tree_with_heatmap.Rd
3b7f4902352f053265c46f08f124cfc9 *man/predict.ddt_lcm.Rd
d6c837d5e5f92633bbd2f89f82caf3a5 *man/predict.summary.ddt_lcm.Rd
0920e75c97ee528c838e86fb6c564e64 *man/print.ddt_lcm.Rd
f3db672eb14b3cd344438757f47936d7 *man/print.summary.ddt_lcm.Rd
ee504102fe47799b910bd808968ac21b *man/proposal_log_prob.Rd
a9debfe7880ebcce25c65b2c87e9ada6 *man/quiet.Rd
c952c294e60a28ac5e064c8f10278838 *man/random_detach_subtree.Rd
cb4f5ee70f78c46a54edb268d9730109 *man/reattach_point.Rd
7af2aa48b4080f65e3e5de897e75f196 *man/result_hchs.Rd
8285b728033ad5ea2cde764c6620c628 *man/sample_c_one.Rd
f8491f63eea3d939c04c20cc17c528be *man/sample_c_two.Rd
9b4a425ead871ebe65d41de5be3adc59 *man/sample_class_assignment.Rd
6d809942173a3d46995af8acffef0afc *man/sample_leaf_locations_pg.Rd
45411a51969f4b7b697519fad3fa00f4 *man/sample_sigmasq.Rd
3af1146462c7ed46add49f544f772024 *man/sample_tree_topology.Rd
1f04eb8eff9a10891868d04e5f1d50d0 *man/simulate_DDT_tree.Rd
4cb839a93362b187c2d61630431c54b9 *man/simulate_lcm_given_tree.Rd
6a33494e3f3e69bc96f15fc8cc8337f3 *man/simulate_lcm_response.Rd
daab02b432d413dc271379bc0f021965 *man/simulate_parameter_on_tree.Rd
63250f8599bc496bb092ca5c6da1a4a4 *man/summary.ddt_lcm.Rd
4d1aa95d5986645c22417f64f0692702 *vignettes/ddtlcm-demo.Rmd
