3d57934753e2e2c0fb4d31b9ca93a13a *DESCRIPTION
245896a9ba2a81bd174715f90013cf72 *NAMESPACE
af179a4cb7e0b41d69cdcefa6e9d480c *R/basic.qc.R
7b877a66a20d8ba822345f315da5bd3e *R/ctl.circle.R
2678c9e97d1e4136b53fcacc1e065f54 *R/ctl.correlation.R
89253c0587aaa215f638d849cf69a0f5 *R/ctl.effects.R
d92468b84ad998cc69297b22930474c7 *R/ctl.hist.R
67e2321fe1f498d9e393defd3dd203e5 *R/ctl.image.R
72647fc2ee5595cce07883cd57fc159a *R/ctl.lineplot.R
97f52d7328413a2747b2c92c339c74e5 *R/ctl.load.R
dbd737fa623bb65dd351dfe508c33354 *R/ctl.network.R
518654fa7e09d1f64b566b6957d06fd3 *R/ctl.plot.R
379345e9839d9e7273b2e1f4fd90a01a *R/ctl.power.R
7df7c784421d253a12edb33fa6493cca *R/ctl.print.R
0405aa546de274abdbc11e48c2b3822f *R/ctl.profiles.R
a248b611c10d9d0c786baf2d93214ad3 *R/ctl.scan.R
c7a0b9b269d872ccd1066a3b78ddd6a8 *R/ctl.sd.R
32b27cf5ffebd4de026f9e262a6e3569 *R/ctl.slope.R
d8a645cbf1eb42f412234525f568a788 *R/ctl.statistics.R
cfd58c2df8e8c3950038ab9a316ac724 *R/ctl.utils.R
72306e764de4ab471a2ca6914330f5e0 *R/detect.peaks.R
1f2b6543d50f6dcea9bad1cd2e8d3245 *R/helper.functions.R
5828cac30823d86cf1257439625dfc22 *R/plot.traits.R
e0998048f612e47b05603eec8ee103c4 *R/qtl.scan.R
8d8f908600059c364633e2e31bb81cc4 *R/zzz.R
4e240b7f0c802491ca24cf4de829b81b *build/vignette.rds
d5c0f84a93d6cff63a2d09be2c1e8ede *data/ath.churchill.RData
d14c25e0db8c81b8d166add049ca9a29 *data/ath.metabolites.RData
cb6f6916e786d104f863256e41131eb3 *data/ath.result.RData
d2cf6a29de34aac3226c44800d571aba *data/datalist
b25e86d075ba627a36df0243cb3b7f02 *data/yeast.brem.RData
9676de147fc266bc0885ba2fc9c039eb *inst/CITATION
d41d8cd98f00b204e9800998ecf8427e *inst/README.txt
d41d8cd98f00b204e9800998ecf8427e *inst/STATUS.txt
149a71828e1c08d946a859ebf4f2633a *inst/TODO.txt
075bdcabf1e0234418cd1315f27de2bf *inst/doc/manual.R
e6d67fb7cd148eeb293334707c37276c *inst/doc/manual.Rnw
f27eba03887fdc88e3a1d94145e75ce5 *inst/doc/manual.pdf
a5b2390a541c6e92765ca6c966c08ae3 *man/ath.churchill.Rd
bc996ff0c9bcf0d2684d53a14e3c1953 *man/ath.metabolites.Rd
7feef6f8fe3e7dd975a71819173ba2be *man/ath.result.Rd
413862895d1c13f2ee0a273f78c84cfe *man/basic.qc.Rd
ef1fba3ecd5ec6f14201c7c8888fcced *man/ctl-internal.Rd
267e4009d2611baa07233bfb8cd3b294 *man/ctl-package.Rd
bbea9a19bd293b461a76388c7f5d8281 *man/ctl.circle.Rd
a8fad3e641c64cc71ad16f51b4c0f76b *man/ctl.helper.Rd
cd189dfad3aa470a4130482b050f13a5 *man/ctl.hist.Rd
4589932a47117ebaeaae4cac43477d46 *man/ctl.image.Rd
5eb98830d69086d74035c32bc6ffffa7 *man/ctl.lineplot.Rd
b652bf605cc1970a629a98e955515f2d *man/ctl.load.Rd
c837e1ca9898612bcb068c9bc983559a *man/ctl.mapping.Rd
c16be9721646ba19edccf468653226cf *man/ctl.network.Rd
029359491cee1ac5ec6bb1af18a850bd *man/ctl.permute.plot.Rd
cf1cdd31112abf66b97f429c675cbffb *man/ctl.plot.ctlobject.Rd
eb0b91c23212fea8f7ce049eb6b6c51b *man/ctl.plot.ctlscan.Rd
1be8a6b28c8abe72ddc4b54e0d22562f *man/ctl.print.ctlobject.Rd
78ee2a999656e1ed7e168ce3467fb657 *man/ctl.print.ctlscan.Rd
129d98c793658dbd2f48807e61f6875c *man/ctl.profiles.Rd
3fd4b957ab18bbc6fb9c30f15ad7a798 *man/ctl.regions.Rd
87148dd155a0bd1fe11b8d3b0f7176dd *man/ctl.scan.Rd
1cde760f1570fd36723a8ae89aee6066 *man/ctl.scan.cross.Rd
19c00e615e29a89bb179eee6ca46fdc2 *man/ctl.significant.Rd
37c710f1effd89e77880c701c92891b2 *man/detect.peaks.Rd
b9b8fbef7cf306d92f57fdd91d82cadd *man/plotTraits.Rd
2e8789c775d02f88d4733d064d8dea9a *man/qtl.image.Rd
20a8af4187e1e0e136c2cd62c894c5b2 *man/qtl.mapping.Rd
59d48e318deb4e68bf58f8a311d1f25d *man/scanSD.Rd
a63b06c0a7b84e4af425ef7d526f93aa *man/scanSD.cross.Rd
c4f44384fba0dfff77b8b7b91a6a1752 *man/scanSlopes.Rd
d22c7942b5bb3bb1ff4f4b88ec093080 *man/scanSlopes.cross.Rd
d0860af241f027ad0ae2a773b8a00652 *man/yeast.brem.Rd
d6da0241462911a08f56cf7010b23f0b *src/Makevars
40a9fa27c27a552fb94768952ef94ee9 *src/R_init.c
d60d893d6b0d7e171dbafe2028f0c47e *src/R_init.h
26f18c5702c2a2027965b179db38af0f *src/correlation.c
fa7d27f072dfe0debaae38656d78e837 *src/correlation.h
7b024fb99a658726e4fb6e99888145e8 *src/ctl.h
0461d554b5c8a2243537faa4f99e993e *src/ctlio.c
a82fb1aad3f6cc90719e38cdb5892472 *src/ctlio.h
d2ab9a67ee35184ade68506f8881c31a *src/mapctl.c
52d58802e5b8fdef903c0f5e7ea64390 *src/mapctl.h
f3881b08f81bb08738788e5f0123adb6 *src/matrix.c
b1a67a9185e1b7d4bcf911e36f8e40d6 *src/matrix.h
bc664337b65ea7a5267b25012ca24f17 *src/permutation.c
d38cea1d6ddd3934282bfabebc3619a3 *src/permutation.h
5240299ec4a27296df477757dcbd09e8 *src/rmapctl.c
1062df8c010559546ea5fb8e7d7c29ab *src/rmapctl.h
fbac82aa47f9b62d59f13251ee2b39c9 *src/sort.c
aec340552e4fdd14279744bacdb8d966 *src/sort.h
ffaf1b240bf1a9e99a913ab4fc418dea *src/structs.c
81c6450a4d5a0f95cb4f018c651393df *src/structs.h
9e16a919e0ddd7e8673a5d4e0b037728 *src/vector.c
dec7642a953b943c722f7038fa90030b *src/vector.h
134ca56d1cbbd606906138e66b232672 *tests/GeneExpression_Yeast_Annotation.txt
91bd041b5821a2bed653b7c296cea90a *tests/GeneExpression_Yeast_RBrem.R
616488f7a9641ac44af130dc35c0b5c3 *tests/GeneExpression_Yeast_RBrem.csvr
7f4cf9ee9d984631151010ecfce1d636 *tests/test_ctl_long.R
5d79577419c374aa12741517b52ec449 *tests/test_openmp.R
e6d67fb7cd148eeb293334707c37276c *vignettes/manual.Rnw
5ca3c4b768554a8812a2fa6deaadf573 *vignettes/prepare.bat
