48e115537741edfcdf05267c0d240df6 *DESCRIPTION
44cdebca2e42ddf8c0f143556cb54938 *NAMESPACE
0ae32d32e715a6f004911bb2e5500997 *R/basic.qc.R
7b877a66a20d8ba822345f315da5bd3e *R/ctl.circle.R
6e1812caab100b2019dbc3fca7dcda59 *R/ctl.correlation.R
b1592f74c0d9e5b72dc53bbb2c715f6c *R/ctl.hist.R
1fceead244679cf79d252223077ba860 *R/ctl.image.R
b7ab16b16802ecdecfe3ed16afd061e8 *R/ctl.lineplot.R
f8f572fd82304657bf049d0c10a8951b *R/ctl.load.R
2fe33e66cf2fcbd94d5f10df0f3c14e8 *R/ctl.network.R
6d9f71e64acea356b457532d589f3663 *R/ctl.plot.R
040bf335aac8367ddd136c0c904af374 *R/ctl.power.R
de0fa4a5311590e501b4c42730fa7d56 *R/ctl.print.R
8269984fbd59625e6c22ec004e1ef76f *R/ctl.profiles.R
567cb06e100257686dcd8370a67bd139 *R/ctl.scan.R
579e801ee786fbe3d85505bc29f16d69 *R/ctl.sd.R
79a48d817106b2eb1109dc4fdfd054fe *R/ctl.slope.R
98c14b6417773b375f2b487cc4c030b5 *R/ctl.statistics.R
deb39c9bdf3fa21c0dd9b2de8874e320 *R/ctl.utils.R
e29cd345c28130c0a72cbc875b4416ae *R/detect.peaks.R
b0aa0ec8b942c6569f3dd6c1852d8bcd *R/helper.functions.R
90091d98bd5d1a577aab708aca2f8345 *R/plot.traits.R
98c19d3eefe37b576c7a66ed00bb4ac0 *R/qtl.scan.R
e440bcc6dbacd2b89d8b6d4d513b8f6a *R/zzz.R
2afcfa32db42992630506cf41216f42a *build/vignette.rds
d5c0f84a93d6cff63a2d09be2c1e8ede *data/ath.churchill.RData
d14c25e0db8c81b8d166add049ca9a29 *data/ath.metabolites.RData
cb6f6916e786d104f863256e41131eb3 *data/ath.result.RData
5781b8f8737e4a3508bd16006aeaee90 *data/datalist
b25e86d075ba627a36df0243cb3b7f02 *data/yeast.brem.RData
580b89bd092282746f0088eb785e8faa *inst/CITATION
d41d8cd98f00b204e9800998ecf8427e *inst/README.txt
d41d8cd98f00b204e9800998ecf8427e *inst/STATUS.txt
c370415e49a24d8ba788731da5e37852 *inst/TODO.txt
c31e51e628ad41ea3df8d8412fb16dbb *inst/doc/manual.R
6bf5485fbacc539d84aa5a213d786241 *inst/doc/manual.Rnw
35de1d25bbac7235443b50e025d89ff1 *inst/doc/manual.pdf
8977361f7b209dfd67d8c5f67242f0a6 *man/ath.churchill.Rd
158c50730b9d275718349395798084d9 *man/ath.metabolites.Rd
11eb4fad2b3cf8fb4a3b1637b0657544 *man/ath.result.Rd
f3031672024c9d214dc85e8c7c7de68b *man/basic.qc.Rd
3c4675ca81407bb3a36a964f8ddb446a *man/ctl-internal.Rd
521b4a745e76b7c208e9529b38dec983 *man/ctl-package.Rd
e98bf8360a6cb5542561f456a186e0b0 *man/ctl.circle.Rd
93cac6634eaa2e7103820547ed418cb7 *man/ctl.helper.Rd
a0338e352b7e83d6d0d265c33d22940f *man/ctl.hist.Rd
7ebd02a0ec781c63e7550713cd59c581 *man/ctl.image.Rd
758bdd488606c2218edc2d768e63a7b1 *man/ctl.lineplot.Rd
2c9982cbebc9b173bde9612fbab686b7 *man/ctl.load.Rd
9d205e20c48ee8452dcd73c61a16cff4 *man/ctl.mapping.Rd
18c143fa80b786f4aaa52a98d79b3c61 *man/ctl.network.Rd
dcf64c9a376408fa8832cdd9214873a4 *man/ctl.permute.plot.Rd
10c96854ec189c06559439591ab84ec6 *man/ctl.plot.ctlobject.Rd
f919b8d253500d7cea0990ee73238e9d *man/ctl.plot.ctlscan.Rd
ca16f85e07e23ea48591097994ba0802 *man/ctl.print.ctlobject.Rd
e609dbfbadc5f4400d37ead3ee5558f0 *man/ctl.print.ctlscan.Rd
5f8ea6f4d27b796e16ca2c2de99f608a *man/ctl.profiles.Rd
5beb76663279c2a28e817c0427285f06 *man/ctl.regions.Rd
28db4249479e2c4e983a89a23a9726c0 *man/ctl.scan.Rd
8320d15e041788aea2680406f74235ad *man/ctl.scan.cross.Rd
99194f13b88bc3e03add706f79167790 *man/ctl.significant.Rd
07bd928bd1f5e5ede64779e8a0fd5c3a *man/detect.peaks.Rd
de059440e532a291d672d64adfad4d4d *man/plotTraits.Rd
83fa6ca61f3c5b41a4aaf439dbf83afc *man/qtl.image.Rd
72e29dfe47e48dfac817daaff1ef6793 *man/qtl.mapping.Rd
c5825e319258f2ad6d74b7c84a1d61e8 *man/scanSD.Rd
7a58829bc4b93f630586459f6df10ddc *man/scanSD.cross.Rd
10aff1d25775ce8b1a47a45eb4160821 *man/scanSlopes.Rd
c879da69e86fd5b414dda8be185353e8 *man/scanSlopes.cross.Rd
7e97d9b47d43f59890e229d9a7ee8023 *man/yeast.brem.Rd
d6da0241462911a08f56cf7010b23f0b *src/Makevars
40a9fa27c27a552fb94768952ef94ee9 *src/R_init.c
d60d893d6b0d7e171dbafe2028f0c47e *src/R_init.h
f454b29502e9839400bc4e35bf616d99 *src/correlation.c
fa7d27f072dfe0debaae38656d78e837 *src/correlation.h
968b3b2ec7977b73dc1ed38bc5724b13 *src/ctl.h
0006c74a309310bbcc212f738d8385b5 *src/ctlio.c
a82fb1aad3f6cc90719e38cdb5892472 *src/ctlio.h
d2ab9a67ee35184ade68506f8881c31a *src/mapctl.c
52d58802e5b8fdef903c0f5e7ea64390 *src/mapctl.h
f3881b08f81bb08738788e5f0123adb6 *src/matrix.c
b1a67a9185e1b7d4bcf911e36f8e40d6 *src/matrix.h
bc664337b65ea7a5267b25012ca24f17 *src/permutation.c
d38cea1d6ddd3934282bfabebc3619a3 *src/permutation.h
8791997cea546a8a9a2a4754e768290c *src/rmapctl.c
1062df8c010559546ea5fb8e7d7c29ab *src/rmapctl.h
fbac82aa47f9b62d59f13251ee2b39c9 *src/sort.c
aec340552e4fdd14279744bacdb8d966 *src/sort.h
55000917f7f5a532423d702dd165f5b6 *src/structs.c
d2ee96dc3217d915c55c81e6888ac742 *src/structs.h
df0e1121dd5ca76e94b640296b6dd4f5 *src/vector.c
dec7642a953b943c722f7038fa90030b *src/vector.h
35db00d2ab1de3ac5ae91057d38f4f6a *tests/GeneExpression_Yeast_Annotation.txt
8a891cc75b8f755f22ab1f1c458271bc *tests/GeneExpression_Yeast_RBrem.R
f023a7d115c9ccf5a482d86242b8b317 *tests/GeneExpression_Yeast_RBrem.csvr
2cabb02b51c9b5e07e899c684ceca590 *tests/test_ctl_long.R
eae2f7a05a3db363ef9edc4c7e20a237 *tests/test_openmp.R
6bf5485fbacc539d84aa5a213d786241 *vignettes/manual.Rnw
e2aed6d35e66545b798296a422674ee0 *vignettes/prepare.bat
