612bed95880db7087adf863adb2bfe91 *DESCRIPTION
ece6fb01760c82c5cb121f1fdf4dc03d *LICENSE
e8309783888e435741dbd2139b8c4687 *NAMESPACE
e872c1e064279377ea65742dd0a05c7a *R/aggregate.R
87bff34ab2e38a93d09ae0d0da8b73df *R/chains.R
16cbcb7503d0753e36e63a5a77892276 *R/community.R
88d73d19e354f35bef55aa03c28a9a97 *R/community_MN.R
18ce0374845c7a643aee5d2733ba6186 *R/community_collection.R
7317dac92b0de1a3e7c5553f91f1db00 *R/community_trophic_links.R
3a9ce8a9be5728df43048589126199a6 *R/config.R
82fd51932b9e66d7156415677e0d1e6c *R/graph.R
d6f0a2ee3d3f58dadc64fd042e71751e *R/graph_nodes.R
e9ef6ca2e0de8320291d839420faa548 *R/graph_trophic_links.R
aaf7fd48f2851b77a726a87ee857df2e *R/graph_util.R
59b3182ff0450390cef14431f999f399 *R/util.R
3fcdc499701220a4901e45dd10d909f4 *build/vignette.rds
5960e9147740176402e5f79cd7858564 *data/Benguela.RData
d904559fdffcdf1add0d951163ed30e8 *data/BroadstoneStream.RData
63fabde937911a39d2598e2cf2c19b3a *data/ChesapeakeBay.RData
1c7cb5f6250b38808b425afed8b5a268 *data/Millstream.RData
4517711d4cfc033bae2895e187ae4213 *data/SkipwithPond.RData
bd5f4d28b6ea2bf25f62ca47082643a9 *data/TL84.RData
d19f9cc279b7aaa6a00e44105456782e *data/TL86.RData
cc5028870f1f09d63690a348bef22664 *data/YthanEstuary.RData
2551742c43e0389b02d213126b8b8372 *data/pHWebs.RData
d5213eac03d23f5de7b4aeb1e6ac5227 *inst/CITATION
74de1ee1111f360b77f80bc57c826b7b *inst/doc/CheddarQuickstart.R
e5d5f7b74e0d9b1addbcf9897d15127e *inst/doc/CheddarQuickstart.Rnw
53f93bfaca3371e448b63b55e4eb099e *inst/doc/CheddarQuickstart.pdf
1ba7da9b1ce973d757354f38864ce614 *inst/doc/Collections.R
2040c592b15fb4eecb743f2b3c9a2c7c *inst/doc/Collections.Rnw
8e7c17aa6f0f012d565599255ed8666e *inst/doc/Collections.pdf
4742250975b7f5246350da4c2b95534f *inst/doc/Community.R
684e7c38845d12936faf352cdeec7ccb *inst/doc/Community.Rnw
293deef69bd2bcb1ed35bedce2b2152d *inst/doc/Community.pdf
0a38a14cfcb7a52573c3e8541804c633 *inst/doc/ImportExport.R
077b065c85866e04bf6674c5c47565d5 *inst/doc/ImportExport.Rnw
ddd4b837f640aa46cc6b20ea59e38a95 *inst/doc/ImportExport.pdf
6218b93d36bf165bdf1291267fe0c9e2 *inst/doc/PlotsAndStats.R
01a34b3a9d045f25a86b1ffb76ae9598 *inst/doc/PlotsAndStats.Rnw
563d9212f4e8db8a1edc0538d2143e21 *inst/doc/PlotsAndStats.pdf
3403ef35819dbdd306752514c7ec2b00 *man/AggregateCommunities.Rd
c5cf3dfeca62a5a7d7530018214d1c05 *man/ApplyByClass.Rd
88d6c8968ed7bf365966a757c757f36b *man/Benguela.Rd
72249dd306262599beeb76a51c51264b *man/BodyMassB.Rd
237a79add6619b45a7a5bc037cce4433 *man/BroadstoneStream.Rd
6d0b61831a33fad66a955c003d4a4626 *man/CP.Rd
697d8c78cdc7dd0ed63006918853d34d *man/CPS.Rd
99b86e38b2996ac873c7dba4be67488c *man/ChesapeakeBay.Rd
4b8f2f79b08f1bae92c638ea9063423c *man/CollectionApply.Rd
b14e171020b658004dacd35b11c3f0b3 *man/CollectionCPS.Rd
6bc8d98eac46b0d4274e25b42236b863 *man/CollectionNPS.Rd
14f30605ab5eeb96162ec870db5528f8 *man/CollectionTLPS.Rd
880b59b483d1e249ffd117dc52efd91e *man/Community.Rd
5604375427cf6d913d9233e7ebae9f9d *man/CommunityCollection.Rd
156d814bd03356fa91b6dd0f7821cd98 *man/CommunityHas.Rd
43640816994c9e5f3497d68f1a9ab449 *man/CommunityPropertyNames.Rd
4fb76cba697e4ede397d73c05b793824 *man/Degree.Rd
7cd28a2349ff2cb61da0e8b1cc4e26a5 *man/DegreeDistribution.Rd
6d4efda0c2ed1d10437fd31243d40990 *man/Intervality.Rd
a9d3bd1a6a945047c19107337f1ebf11 *man/IsCannibal.Rd
b193347700f621042e5e5f375f9b9a4f *man/LinearRegressionByClass.Rd
c0b7505f10ea259cdcf597c5086464c9 *man/LoadCollection.Rd
d8bd84db1de847e843d6d285db9865ef *man/LoadCommunity.Rd
8f392a6dd25001104bd048641a29d3a6 *man/LumpNodes.Rd
0632f6cd9a8c73e41e8e34aecdb5cca5 *man/LumpTrophicSpecies.Rd
a3a8013f6455c1f5166fe6eaab5f4333 *man/Millstream.Rd
b5484164889532a187150f1caa001c81 *man/NP.Rd
426317d32126104d5b5153d45beb4289 *man/NPS.Rd
d68e0558053e5ed4746b63f5828ccef2 *man/NodeConnectivity.Rd
f254a0eeeba4b47a4faf795881358b02 *man/NodeMNUtilities.Rd
bfd1a71a24c25f792a2b4bbc6a244d36 *man/NodeNameIndices.Rd
9cc41de9404d55bbbf62a1d6e4ffce9e *man/NodePropertyNames.Rd
64b27d87d026ed0062140e3db749de96 *man/NumberOfNodes.Rd
39a65e737750b702555675668da7c5d4 *man/NumberOfTrophicLinks.Rd
40461799b3e7f09c34a0e4bae4b08ef0 *man/NvMConvexHull.Rd
04de6fdcf7f01fe9fba0ec6c222e22d9 *man/NvMLinearRegressions.Rd
75157adf98d7c2804fc2abe6bfafb8e6 *man/NvMTriTrophicStatistics.Rd
d5c0769ed859a596fe77e52c84afbbd0 *man/NvMTriTrophicTable.Rd
10204cc3cdb8cd6bc43945b22816eea6 *man/Omnivory.Rd
54196b31fb0fc98e224771729b3980c5 *man/OrderCollection.Rd
df5b2f8c4ba53ec668c00d60dd04da44 *man/OrderCommunity.Rd
3fbc37ae87bd2f4dac633e61524bdd1c *man/PlotAuppervAlower.Rd
9325705f3fa5c5c801aa7dc4a5d72429 *man/PlotCircularWeb.Rd
183fca93de93959f2b768b91ff43d65e *man/PlotHelpers.Rd
1b0d56cdf4cd6bf60b40eaffc04921b9 *man/PlotNPS.Rd
69a4030afa36d4be6eec6050ee20e338 *man/PlotNPSDistribution.Rd
bdb4174bbe4cb8ad8f0f440d0f5d34c6 *man/PlotPyramid.Rd
bac095333d149fd83d155f2d902a8013 *man/PlotRankNPS.Rd
de1137bd0f7cad798487f9d3f97cd247 *man/PlotSpectrum.Rd
6696906b08db525009cc6079818b9b53 *man/PlotTLPS.Rd
e48746d1af23515f34757a433652e692 *man/PlotWagonWheel.Rd
278f3c6557fa6ff6e01cacf540c23568 *man/PlotWebByLevel.Rd
497d55e3e6fe4206263127175449de55 *man/PredationMatrix.Rd
6ae1df6bee7f0d67e8c277848b9fddc8 *man/PredationMatrixToLinks.Rd
c4cf4c634786a029174aabe28aecfc54 *man/QuantitativeDescriptors.Rd
5fa38d771856fb16a2ffda02b865da71 *man/RemoveCannibalisticLinks.Rd
5771499121eb48460fb6070763cc174d *man/RemoveIsolatedNodes.Rd
fc9ad0d92026efc2edf7fe9cff9858bf *man/RemoveNodes.Rd
78d29845356d75042bd91b421b89c927 *man/ResourceLargerThanConsumer.Rd
4a88e017591952396cbb88dc065d4d3d *man/ResourcesByNode.Rd
aca92f479b0016c3aeb8ab7ed292cb82 *man/ShortestPaths.Rd
10f80fd0e6dcdc27d9daf275bb8df5f9 *man/SiteBySpeciesMatrix.Rd
3c4b26ef92f2149b4d98cc6c46663b54 *man/SkipwithPond.Rd
9dd1edbeb36918e2fb39e953c6787e74 *man/TL84.Rd
9d3076787b2ea74d89f24a8e8c3ea082 *man/TLP.Rd
f22841b65d55258c1cb60f2dfd28a119 *man/TLPS.Rd
e7e727e91dc4ceffe3d7e8887fe4890c *man/ThreeNodeChains.Rd
66984a9a0af13cabbd943251f9aa6758 *man/TrophicChains.Rd
8919c8ba1be6a5ef2f6774fca053a1f8 *man/TrophicChainsStats.Rd
228f14bd3e279b561c53b6e6825483e6 *man/TrophicLevels.Rd
e08a4b086382c2c6db60bf33b0c07945 *man/TrophicLinkPropertyNames.Rd
25a6a3bdbd4fd50ce49da56015e2539d *man/TrophicSimilarity.Rd
1247f4691de35dac8a9abcab0a01f81b *man/TrophicSpecies.Rd
6e9424581fd7f1fbf48dbc6acf87e8fb *man/YthanEstuary.Rd
a43c73e3043f531569c4342e84e6b007 *man/cheddar.Rd
21ecca058eb60dbaa378dc0c6cb66879 *man/pHWebs.Rd
5d23d6500d84c42e3857ec9dbe991819 *man/subset.CommunityCollection.Rd
d2ff9d8038afdf3798ff97c9ba9cca14 *src/anneal.cpp
e3ce31504135afbe5d4401386084ad4e *src/cheddar_exception.h
102f1a120dc8d62a655ef0905a0aab7a *src/shortest_paths.cpp
33b9140cb28168efd8b54f1936f340ad *src/trophic_chains.cpp
02f2b51a594f144dd609fc10b211ea56 *tests/community_MN_test.R
2216b5020cc13e9f72b589b368c0e87e *tests/community_collection_test.R
3113bb3338dd77633cb183c2cbf09e6f *tests/community_test.R
a0d12ca764ab85a1564fd99f4f5996b2 *tests/community_trophic_links_test.R
a9f9c728c36ee07f5ca0ca9a0e418a7c *tests/graph_tests.R
8089d64a417f84d4dd929e47b0d42df0 *tests/run.R
3319399a61a09fa8dc8d288695bea756 *tests/util_test.R
e5d5f7b74e0d9b1addbcf9897d15127e *vignettes/CheddarQuickstart.Rnw
2040c592b15fb4eecb743f2b3c9a2c7c *vignettes/Collections.Rnw
684e7c38845d12936faf352cdeec7ccb *vignettes/Community.Rnw
57f768b5822188988d0481d9cddd4158 *vignettes/Grassland1994/communities/Plot1/nodes.csv
60f8b34a837e78a964c08f5f9a835f4f *vignettes/Grassland1994/communities/Plot1/properties.csv
fd02632017a4ce0d77a69bb3df172104 *vignettes/Grassland1994/communities/Plot1/trophic.links.csv
36d180b4b03a5e64f25e031f37153768 *vignettes/Grassland1994/communities/Plot2/nodes.csv
a0b447a101fb2c66a76990b6cd66e0bd *vignettes/Grassland1994/communities/Plot2/properties.csv
91154b462e7b566a81aa747398b68c2b *vignettes/Grassland1994/communities/Plot2/trophic.links.csv
5aca1088752581cdcde5593ee2ece81e *vignettes/Grassland1994/communities/Plot3/nodes.csv
1721aeb609d8d28ab5e3de6cfb8c7f0d *vignettes/Grassland1994/communities/Plot3/properties.csv
070b66dfca0bd6d13bb51c3c1f6c4179 *vignettes/Grassland1994/communities/Plot3/trophic.links.csv
077b065c85866e04bf6674c5c47565d5 *vignettes/ImportExport.Rnw
01a34b3a9d045f25a86b1ffb76ae9598 *vignettes/PlotsAndStats.Rnw
4b36655ddb1f3a5aefab914462e9a635 *vignettes/Stream12/nodes.csv
81c47de836c416e332afb743f798a01e *vignettes/Stream12/properties.csv
927ed9fc37a1f8ad580149ac279aa1a8 *vignettes/Stream12/trophic.links.csv
efec1c0ee193db57f8f5d0d027507fa9 *vignettes/cheddar.bib
