ece737c677f4ce993d248fccbc86be77 *DESCRIPTION
ac1dc66f161723e60beda93c99e74b41 *NAMESPACE
e872c1e064279377ea65742dd0a05c7a *R/aggregate.R
7e7c4dd993f5eeb3b34fe0abd5d2dabd *R/chains.R
126b529318454fd8c3eca1e0c2844e8f *R/community.R
27de6018a8f39b43bf9a4e52ef19937f *R/community_MN.R
18ce0374845c7a643aee5d2733ba6186 *R/community_collection.R
37bf842f3cf3449ed3fe42a4a7231660 *R/community_trophic_links.R
82fd51932b9e66d7156415677e0d1e6c *R/graph.R
15f66f196f86eb30041364a165fa30b5 *R/graph_nodes.R
e9ef6ca2e0de8320291d839420faa548 *R/graph_trophic_links.R
aaf7fd48f2851b77a726a87ee857df2e *R/graph_util.R
9c9eec2955691263b1e141eb95520ee0 *R/util.R
6300296df4acaccab610ddf4d73c9688 *README.md
dea7bc255550fc12a99cd842b831cdb9 *build/vignette.rds
208616b32cbe5f0b090c2b17bb27d78c *data/Benguela.RData
468c0610fc3e62501895f09c6c89577a *data/BroadstoneStream.RData
183c8870caa00064032d74be6b336d1f *data/ChesapeakeBay.RData
20a56c0d53c0f759f2f4f14822d75e8d *data/Millstream.RData
2e455a6f806432f458acd286487d57b0 *data/SkipwithPond.RData
baafb4e5697b15292a8164a163c7de1e *data/TL84.RData
6b3446ffda588373b96a9ae261ea2736 *data/TL86.RData
bdfbb1857585ccbc692a5086ca18122b *data/YthanEstuary.RData
548500ed3694d3038b20f84be4dcd708 *data/pHWebs.RData
6c7d92e73aa66107498e2cbcc9a9c4fa *inst/CITATION
dd5a7fc152d163dda0788a3b8d032c37 *inst/doc/CheddarQuickstart.R
8d77c60b707230823578fa889a066e57 *inst/doc/CheddarQuickstart.Rnw
a77ca77a465c72e90e48c55499a2dac1 *inst/doc/CheddarQuickstart.pdf
a5c3a3d6c6358d610b1dc7adbaf0fa92 *inst/doc/Collections.R
f8282a11ead6d7bc9b0a0568f9433c27 *inst/doc/Collections.Rnw
12fdb34e13de865db33eaef23999580a *inst/doc/Collections.pdf
e21b3b9ae0ba89440d0e667c2cedf21a *inst/doc/Community.R
f0e7b0b31160316d35f65fe7a5335c0b *inst/doc/Community.Rnw
225a3d035d63944e112208f9f31fac6d *inst/doc/Community.pdf
cebfacd2224fc4531c45474e1be29150 *inst/doc/ImportExport.R
9cc550d79dfa5628317e7853fce82f76 *inst/doc/ImportExport.Rnw
8c0bd74f9a2da9419315bdd9fe6229d8 *inst/doc/ImportExport.pdf
8667d091c5ec15f52b0c76f739a632d4 *inst/doc/PlotsAndStats.R
da5f0947a77704fa2ce738df8e70c3aa *inst/doc/PlotsAndStats.Rnw
074aa9712e345fd2d351fa425dda79c9 *inst/doc/PlotsAndStats.pdf
3403ef35819dbdd306752514c7ec2b00 *man/AggregateCommunities.Rd
c5cf3dfeca62a5a7d7530018214d1c05 *man/ApplyByClass.Rd
88d6c8968ed7bf365966a757c757f36b *man/Benguela.Rd
72249dd306262599beeb76a51c51264b *man/BodyMassB.Rd
237a79add6619b45a7a5bc037cce4433 *man/BroadstoneStream.Rd
6d0b61831a33fad66a955c003d4a4626 *man/CP.Rd
697d8c78cdc7dd0ed63006918853d34d *man/CPS.Rd
69eeba95e089e06f29922941a5f2623f *man/Chains.Rd
99b86e38b2996ac873c7dba4be67488c *man/ChesapeakeBay.Rd
4b8f2f79b08f1bae92c638ea9063423c *man/CollectionApply.Rd
b14e171020b658004dacd35b11c3f0b3 *man/CollectionCPS.Rd
6bc8d98eac46b0d4274e25b42236b863 *man/CollectionNPS.Rd
14f30605ab5eeb96162ec870db5528f8 *man/CollectionTLPS.Rd
880b59b483d1e249ffd117dc52efd91e *man/Community.Rd
5604375427cf6d913d9233e7ebae9f9d *man/CommunityCollection.Rd
156d814bd03356fa91b6dd0f7821cd98 *man/CommunityHas.Rd
43640816994c9e5f3497d68f1a9ab449 *man/CommunityPropertyNames.Rd
4fb76cba697e4ede397d73c05b793824 *man/Degree.Rd
7cd28a2349ff2cb61da0e8b1cc4e26a5 *man/DegreeDistribution.Rd
6d4efda0c2ed1d10437fd31243d40990 *man/Intervality.Rd
a9d3bd1a6a945047c19107337f1ebf11 *man/IsCannibal.Rd
b193347700f621042e5e5f375f9b9a4f *man/LinearRegressionByClass.Rd
c0b7505f10ea259cdcf597c5086464c9 *man/LoadCollection.Rd
d8bd84db1de847e843d6d285db9865ef *man/LoadCommunity.Rd
8f392a6dd25001104bd048641a29d3a6 *man/LumpNodes.Rd
0632f6cd9a8c73e41e8e34aecdb5cca5 *man/LumpTrophicSpecies.Rd
a3a8013f6455c1f5166fe6eaab5f4333 *man/Millstream.Rd
b5484164889532a187150f1caa001c81 *man/NP.Rd
426317d32126104d5b5153d45beb4289 *man/NPS.Rd
5f5a3cbac68343628b92fe4254ac68d0 *man/NodeConnectivity.Rd
f254a0eeeba4b47a4faf795881358b02 *man/NodeMNUtilities.Rd
bfd1a71a24c25f792a2b4bbc6a244d36 *man/NodeNameIndices.Rd
9cc41de9404d55bbbf62a1d6e4ffce9e *man/NodePropertyNames.Rd
64b27d87d026ed0062140e3db749de96 *man/NumberOfNodes.Rd
39a65e737750b702555675668da7c5d4 *man/NumberOfTrophicLinks.Rd
40461799b3e7f09c34a0e4bae4b08ef0 *man/NvMConvexHull.Rd
04de6fdcf7f01fe9fba0ec6c222e22d9 *man/NvMLinearRegressions.Rd
1092d0959554c993e0717c511892046d *man/NvMTriTrophicStatistics.Rd
d5c0769ed859a596fe77e52c84afbbd0 *man/NvMTriTrophicTable.Rd
10204cc3cdb8cd6bc43945b22816eea6 *man/Omnivory.Rd
54196b31fb0fc98e224771729b3980c5 *man/OrderCollection.Rd
df5b2f8c4ba53ec668c00d60dd04da44 *man/OrderCommunity.Rd
3fbc37ae87bd2f4dac633e61524bdd1c *man/PlotAuppervAlower.Rd
9eaad14cbf95431c18b40eadbf0d2aff *man/PlotCircularWeb.Rd
183fca93de93959f2b768b91ff43d65e *man/PlotHelpers.Rd
1b0d56cdf4cd6bf60b40eaffc04921b9 *man/PlotNPS.Rd
69a4030afa36d4be6eec6050ee20e338 *man/PlotNPSDistribution.Rd
bdb4174bbe4cb8ad8f0f440d0f5d34c6 *man/PlotPyramid.Rd
bac095333d149fd83d155f2d902a8013 *man/PlotRankNPS.Rd
de1137bd0f7cad798487f9d3f97cd247 *man/PlotSpectrum.Rd
6696906b08db525009cc6079818b9b53 *man/PlotTLPS.Rd
278f3c6557fa6ff6e01cacf540c23568 *man/PlotWebByLevel.Rd
497d55e3e6fe4206263127175449de55 *man/PredationMatrix.Rd
6ae1df6bee7f0d67e8c277848b9fddc8 *man/PredationMatrixToLinks.Rd
c4cf4c634786a029174aabe28aecfc54 *man/QuantitativeDescriptors.Rd
5fa38d771856fb16a2ffda02b865da71 *man/RemoveCannibalisticLinks.Rd
5771499121eb48460fb6070763cc174d *man/RemoveIsolatedNodes.Rd
fc9ad0d92026efc2edf7fe9cff9858bf *man/RemoveNodes.Rd
78d29845356d75042bd91b421b89c927 *man/ResourceLargerThanConsumer.Rd
4a88e017591952396cbb88dc065d4d3d *man/ResourcesByNode.Rd
aca92f479b0016c3aeb8ab7ed292cb82 *man/ShortestPaths.Rd
10f80fd0e6dcdc27d9daf275bb8df5f9 *man/SiteBySpeciesMatrix.Rd
3c4b26ef92f2149b4d98cc6c46663b54 *man/SkipwithPond.Rd
9dd1edbeb36918e2fb39e953c6787e74 *man/TL84.Rd
9d3076787b2ea74d89f24a8e8c3ea082 *man/TLP.Rd
f22841b65d55258c1cb60f2dfd28a119 *man/TLPS.Rd
906bb3638016da3ac7bd264afbe43a3d *man/ThreeNodeChains.Rd
029f47bbbcb141ead1afddf9b986aa8d *man/TrophicChains.Rd
dbb7ec9def84269cd673346c9e54ed34 *man/TrophicChainsStats.Rd
c013b8eb464011df08802a69feb35a05 *man/TrophicLevels.Rd
e08a4b086382c2c6db60bf33b0c07945 *man/TrophicLinkPropertyNames.Rd
25a6a3bdbd4fd50ce49da56015e2539d *man/TrophicSimilarity.Rd
1247f4691de35dac8a9abcab0a01f81b *man/TrophicSpecies.Rd
6e9424581fd7f1fbf48dbc6acf87e8fb *man/YthanEstuary.Rd
64e36fcaecf05cbae2f9b8ce90f15958 *man/cheddar.Rd
21ecca058eb60dbaa378dc0c6cb66879 *man/pHWebs.Rd
5d23d6500d84c42e3857ec9dbe991819 *man/subset.CommunityCollection.Rd
6fe5e2b002d979e4922c79c588fcd575 *src/anneal.cpp
e3ce31504135afbe5d4401386084ad4e *src/cheddar_exception.h
8c0ef0019ef8e3d854e9e5fce454040e *src/shortest_paths.cpp
64344e77c70f6647d0ea27f7fe71e7da *src/trophic_chains.cpp
77c1ee37f34e10742ba2080ede2d6807 *tests/community_MN_test.R
2216b5020cc13e9f72b589b368c0e87e *tests/community_collection_test.R
3113bb3338dd77633cb183c2cbf09e6f *tests/community_test.R
4d686b4a580e5bff01c634b251ed453b *tests/community_trophic_links_test.R
8089d64a417f84d4dd929e47b0d42df0 *tests/run.R
3319399a61a09fa8dc8d288695bea756 *tests/util_test.R
8d77c60b707230823578fa889a066e57 *vignettes/CheddarQuickstart.Rnw
f8282a11ead6d7bc9b0a0568f9433c27 *vignettes/Collections.Rnw
f0e7b0b31160316d35f65fe7a5335c0b *vignettes/Community.Rnw
57f768b5822188988d0481d9cddd4158 *vignettes/Grassland1994/communities/Plot1/nodes.csv
60f8b34a837e78a964c08f5f9a835f4f *vignettes/Grassland1994/communities/Plot1/properties.csv
fd02632017a4ce0d77a69bb3df172104 *vignettes/Grassland1994/communities/Plot1/trophic.links.csv
36d180b4b03a5e64f25e031f37153768 *vignettes/Grassland1994/communities/Plot2/nodes.csv
a0b447a101fb2c66a76990b6cd66e0bd *vignettes/Grassland1994/communities/Plot2/properties.csv
91154b462e7b566a81aa747398b68c2b *vignettes/Grassland1994/communities/Plot2/trophic.links.csv
5aca1088752581cdcde5593ee2ece81e *vignettes/Grassland1994/communities/Plot3/nodes.csv
1721aeb609d8d28ab5e3de6cfb8c7f0d *vignettes/Grassland1994/communities/Plot3/properties.csv
070b66dfca0bd6d13bb51c3c1f6c4179 *vignettes/Grassland1994/communities/Plot3/trophic.links.csv
9cc550d79dfa5628317e7853fce82f76 *vignettes/ImportExport.Rnw
da5f0947a77704fa2ce738df8e70c3aa *vignettes/PlotsAndStats.Rnw
4b36655ddb1f3a5aefab914462e9a635 *vignettes/Stream12/nodes.csv
81c47de836c416e332afb743f798a01e *vignettes/Stream12/properties.csv
927ed9fc37a1f8ad580149ac279aa1a8 *vignettes/Stream12/trophic.links.csv
efec1c0ee193db57f8f5d0d027507fa9 *vignettes/cheddar.bib
