014aae0013fbe4d4cd5440aeba7c2984 *DESCRIPTION
a28307a73ccf0ae8949eb678f4793860 *NAMESPACE
122433292ae0489a019c8825a98bfd54 *R/RcppExports.R
93a1f04f79a55620c14af8dc4ce52ba0 *R/asr_empirical_probabilities.R
9dc91c47c8266a56bcb99176c4bca7ef *R/asr_independent_contrasts.R
0588858bcfb11fadeb8ca8a4711a00ee *R/asr_max_parsimony.R
35a2b1d0b8db0de1cc10ccc20cc0dc36 *R/asr_mk_model.R
d27dd7b3fc2066d9a30c0d3107ba722f *R/asr_squared_change_parsimony.R
85e213e01a074c44981a5c6e9ed04f92 *R/collapse_tree_at_resolution.R
55ce4e361b2755b0170f3b21db8ab2a1 *R/count_clades_over_time.R
d736e8020a5799df6ce10fb5d6b3baae *R/count_tips_per_node.R
5ca0e410c6967b748b8e0346666f9180 *R/exponentiate_matrix.R
831999b4f255360557f5852d762f2208 *R/find_nearest_tips.R
5e8a110182785dc41dcc0ac88f009ea0 *R/find_root.R
b665f4d0c723ab385c9bdd7ec8a0910e *R/fit_bm_model.R
3ad627e73bbe710dd057641e33114bb4 *R/fit_random_tree_model.R
c898ac149f0b834dfe97d2af7489ac47 *R/generate_random_tree.R
28af55d0af57073595d3665f34e2d902 *R/get_all_distances_to_root.R
e3f530defd25f1889a6d6bc9a620cec2 *R/get_independent_contrasts.R
10714e99dc514dcf8735baec012f43e7 *R/get_mrca_of_set.R
ca4e0d3d97450c056cf8e6bc50b782f1 *R/get_pairwise_distances.R
c91a89675f18c56273fc10c600a21df3 *R/get_pairwise_mrcas.R
c6e21e4e0479b619d499d959c1891089 *R/get_random_diffusivity_matrix.R
99218f67b88da59072522759d285d41c *R/get_random_mk_transition_matrix.R
f9de590cb60abf56cc29c154fccd9e85 *R/get_stationary_distribution.R
00b53255287248cf9dfc1c9f8595a423 *R/get_subtree_at_node.R
82804f00c01679e9cb617e7b854d4e33 *R/get_subtree_with_tips.R
7533a04be559994c0f9e665a7d5b0411 *R/get_tips_for_mrcas.R
60d15cce8a438d078b3cf16d844cb8e3 *R/get_trait_acf.R
6f75cc25f1ba8c13a1a448a716bccc10 *R/get_trait_depth.R
00a390a11e5650d166fc45918e6e957d *R/get_transition_index_matrix.R
bf67c1a32504565d4bbc24c6841e1de6 *R/get_transition_matrix_from_rate_vector.R
b412267bedf3561f21a8ffdf023f2f4b *R/get_tree_traversal_root_to_tips.R
afdf6a82a6c3c6ac013b52a12ff580bb *R/hsp_empirical_probabilities.R
0fd951700483a9896115f01d7d5627b2 *R/hsp_independent_contrasts.R
3a22540645a0aaf46635a0a4e79f2b43 *R/hsp_max_parsimony.R
15972848f37cca7c9bfed55861a6b2cf *R/hsp_mk_model.R
9c55c080c8c8a675d3f3b10b19c90567 *R/hsp_squared_change_parsimony.R
27e8f0013e26c11ea335fe3573f48183 *R/is_monophyletic.R
525b6911edc37f1822f268bfd24606fa *R/map_tip_or_node_names_to_indices.R
b3effc09d0c3d17cc1d607197ba3282b *R/map_to_state_space.R
6bc5795f82ae9d27c8d231cd54b06254 *R/multifurcations_to_bifurcations.R
385c63ffd14beb5e9e92cf7002000e94 *R/pick_random_tips.R
99658e44e24f36812b905179f039d394 *R/reorder_tree_edges.R
e0415b7887b37e57789904dc57e0e27b *R/root_at_node.R
c02bb5e79b4e2bc30317a59eeb0be290 *R/simulate_bm_model.R
c0b22daf4cce24f01a0715511aa3fc20 *R/simulate_mk_model.R
473739c07568c4f017bf5580a687f534 *R/simulate_ou_model.R
91db8e678d574ffcb3e8e91108040d42 *R/simulate_rou_model.R
c34d3c1dc4c0e949f06523ec3e8e918d *R/write_tree.R
bd2e73fa7681814d1e25bdc82314599d *inst/CITATION
48927d199ef125faf6e8c34cebaa980d *man/asr_empirical_probabilities.Rd
d781c4e6efd918f02e2575f60bd036d6 *man/asr_independent_contrasts.Rd
ae19f3d4806713f34a83ae1ece4fc48f *man/asr_max_parsimony.Rd
48d2b5d2f53fb80a61d1867166953ae7 *man/asr_mk_model.Rd
024cfb4da1ca4c615299058771fa23a1 *man/asr_squared_change_parsimony.Rd
701847cd35c1637bfc7124623e8ca6bb *man/castor.Rd
bda9b10e2370940465a9777b7ae85431 *man/collapse_tree_at_resolution.Rd
99c869f203744dc97b9a0b49fdbd3e7b *man/count_clades_over_time.Rd
bf5cc200a71b238178a1ab614d55b3b5 *man/count_tips_per_node.Rd
164411f08b5adabfdc2d15d87285fe55 *man/exponentiate_matrix.Rd
241560920a4c80fd2fd8e377fb829be8 *man/find_nearest_tips.Rd
f4cc1d8545750ca04df0c591e85cbd54 *man/find_root.Rd
e64fdda01147b4466892e632fdfb1422 *man/fit_bm_model.Rd
db1ab4338c625fcf9ea58820842e5de8 *man/generate_random_tree.Rd
eeec64eaee69757501735a468e376629 *man/get_all_distances_to_root.Rd
4d6a0798f1378d5e20a15c45c18b8d20 *man/get_independent_contrasts.Rd
64817e80126848ad5c4f82ce203f5f2a *man/get_mrca_of_set.Rd
7613165dd989168d5e425ea2e444f92c *man/get_pairwise_distances.Rd
bb5e6c7268b7ab80f579fb2073f97a69 *man/get_pairwise_mrcas.Rd
babcc004d68152620e747b60732bd313 *man/get_random_diffusivity_matrix.Rd
d9b6ce53d0a29ecbbd7bd1f4f30c7a61 *man/get_random_mk_transition_matrix.Rd
ed439b4a11de01cb319be81f1b60d176 *man/get_stationary_distribution.Rd
9a77ec74b9edb49a9f03f4f4300d811d *man/get_subtree_at_node.Rd
b01fd46dfcd6488544ed0e7d8e85f4fd *man/get_subtree_with_tips.Rd
bf73435e64f24c8a6c260c11975dde1a *man/get_tips_for_mrcas.Rd
a51e940e0bcb2a3aa5c6578018b2bf33 *man/get_trait_acf.Rd
529dd51b506aecc214fadbadd33697cc *man/get_trait_depth.Rd
f95fb7fa4b50df705b4dbc4d52a5e0b2 *man/get_tree_traversal_root_to_tips.Rd
ae58ebb696ca35139aad6bc4231baf8f *man/hsp_empirical_probabilities.Rd
4fe24c191962c63fa705f14c4a78fbdc *man/hsp_independent_contrasts.Rd
0283ae7bf389ee2ceaab880c5df2e8e9 *man/hsp_max_parsimony.Rd
bcf5ebef96c3e28857640342007ab759 *man/hsp_mk_model.Rd
decc67381549f0c6c5d8ce421c66b485 *man/hsp_squared_change_parsimony.Rd
39df595c7425b768d2e83790746da129 *man/is_monophyletic.Rd
9af14b79f52f18c84edec02ab0387d72 *man/map_to_state_space.Rd
3db5290779f62018c10e744f9066731c *man/multifurcations_to_bifurcations.Rd
fd6a48af2578ed15d57f4e56b330e08e *man/pick_random_tips.Rd
c49b4a0bd43481c3e341f42ea48492d6 *man/reorder_tree_edges.Rd
c12578470c8a4063030913c5040f7d77 *man/root_at_node.Rd
3eb3206867558f502dd311e6dd91e815 *man/simulate_bm_model.Rd
9355418dbbc03ee37ed9f48a2c5dbd4f *man/simulate_mk_model.Rd
774bc4c7d1aa5f51ae5df6d16eedab31 *man/simulate_ou_model.Rd
b4ebe0d92272e6dd7a49b178ccee8adf *man/simulate_rou_model.Rd
0e6a37d3da21d93e34bd9a5c3a8383de *man/write_tree.Rd
e0854b7d4ddfdeed952a1864842b7a3d *src/RcppExports.cpp
f5139d5bdf41a200fb03936bed9a5b8e *src/phylogenetics_cpp_routines.cpp
7c22b1b500cab25872924e218f1645f5 *src/registerDynamicSymbol.c
