importFrom("grDevices", "colorRampPalette", "dev.off", "pdf", "rgb")
import("graphics")
importFrom("stats", "coef", "coefficients", "cor", "dist", "lm", "median", "na.omit", "p.adjust", "qnorm", "runif", "sd", "var", "vcov", "cov", "qqplot")
importFrom("utils", "read.table", "write.table", "tail")
importFrom("corpcor", pseudoinverse)
importFrom("evd", qgev, fgev)
importFrom("qpcR", propagate)
importFrom("Matrix", rankMatrix)
import("igraph")
importFrom("fdrtool", fdrtool)
importFrom("shape", Arrowhead)
importFrom("HardyWeinberg", HWExact)
importFrom("RColorBrewer", brewer.pal)
import("doParallel")
import("foreach")
import("regress")

export(bin.vector, calc.delta.errors, calc.p, consec.pairs, delete.pheno, direct.influence, error.prop, filter.hwe, filter.maf, genome.wide.threshold.1D.parallel, genome.wide.threshold.1D, get.chr.markers, get.col.num, get.col, get.covar, get.eigentraits, get.geno, get.geno.with.covar, get.layout.mat, get.linearly.independent, get.marker.chr, get.marker.idx, get.marker.location, get.marker.name, get.marker.num, get.marker.val, get.network, get.pairs.for.pairscan, get.pheno, histPheno, impute.missing.geno, kinship.on.the.fly, kinship, linkage.blocks.network, make.data.obj, marker2covar, myImagePlot, norm.pheno, one.pairscan.parallel, one.singlescan, pair.matrix, pairscan.kin, pairscan.noKin, pairscan.null, pairscan, pheno2covar, plotCollapsedVarInf, plotNetwork, plotPairscan, plotPheno, plotPhenoCor, plotSinglescan.heat, plotSinglescan, plotSVD, plotVariantInfluences, qqPheno, read.geno, read.pheno, read.population, remove.ind, remove.markers, report.progress, rotate.mat, rz.transform, segment.region, select.by.chr, select.by.ind, select.eigentraits, select.markers.for.pairscan, select.pheno, singlescan, sortByThenBy, sortCross, writePopulation, writeVariantInfluences)


