a4ddcdbb8a6333f84be7a0ea94dd49e2 *DESCRIPTION
4cecc86c3bf936987b4004eaf0236f77 *NAMESPACE
96ea7598d61f70199fd3c47adb6d1d4f *R/bin.vector.R
c98413993a5f975d09247d1fdf5d18ea *R/calc.delta.errors.R
e189a35c2656d342c6f37acec649e833 *R/calc.p.R
bf5bac680e43749ba56b21ce66bd935a *R/consec.pairs.R
a791b479de0567adc84d6f01ec47aa69 *R/delete.pheno.R
be862dd80a46d40d0bfe8a5870946fd4 *R/direct.influence.R
14b636729336b9f9ee2d5cdf48ecc0d5 *R/error.prop.R
7c02705670dd3a1b2c9003ac41913b8e *R/filter.hwe.R
1ddae66a568404b0195684ed969cc613 *R/filter.maf.R
b03b34aca59d67b72d69aafecce6922a *R/genome.wide.threshold.1D.R
2180b5de4429078e20c282a2513d0d37 *R/genome.wide.threshold.1D.parallel.R
f02460b21f3095de13e9b41b19bb8425 *R/get.chr.markers.R
37fe4e32b2028a23d4cedb801925681c *R/get.col.R
802ff5cb6183fa89d7d653db893b8d10 *R/get.col.num.R
055f9e7aa3b17742fb42e41e490d4891 *R/get.covar.R
5d0b0225fb731bb89bb99e8772fe1aa0 *R/get.eigentraits.R
f853205e19e0958a828264ac3b432368 *R/get.geno.R
fdc77b2df0956c676ba67fd11ed3e372 *R/get.geno.with.covar.R
206dee3252108e8500cc9f8539e031e4 *R/get.layout.mat.R
1c5dbd8b38de9e9561a94d1d52844846 *R/get.linearly.independent.R
fc032640d559ad4e0fe8327733bbe68c *R/get.marker.chr.R
c2f40149fad9057d42a73ffffdff3f88 *R/get.marker.idx.R
33c74a4257db82a154ebdf5808e5ee92 *R/get.marker.location.R
85a20114dae25231d0eefae94902b904 *R/get.marker.name.R
2db7489b03452baab267cb82a412f8ed *R/get.marker.num.R
2117ed2cac17b61ac2c55c20a7443031 *R/get.marker.val.R
3133b05ffb620f4c274a24c33085e1f0 *R/get.network.R
904beb445922a80cabdc27a316b4d4b7 *R/get.pairs.for.pairscan.R
5f90da9ccc11856a7b55bb0ce8ec4a2e *R/get.pheno.R
0565151e7e2a549e28cc27790f446b80 *R/histPheno.R
7b4de11014f96d19dedae998b2b13db4 *R/impute.missing.geno.R
fa2cffed1f837ab7858a7c9178fe5e1c *R/kinship.R
1d80ea3eb79a893acf578b790816b1cb *R/kinship.on.the.fly.R
59c7c91284402e65e27684bef190bbd1 *R/linkage.blocks.network.R
815a35e344c718efd117bda9880bb83d *R/make.data.obj.R
e7bcff7c817c841c4a9bd2cf11d11307 *R/marker2covar.R
5390722fe2e1485ccc95c67c258bf3b2 *R/myImagePlot.R
82a6dccfb04cbb5cfa9a39dd1dedf4cc *R/norm.pheno.R
b82e9daa8e64f3e6efe176a6a3b954e8 *R/one.pairscan.parallel.R
457358b3147383e21e680b9889a3da0c *R/one.singlescan.R
bfd44b1ba6bc47a1ad93c5d19780da80 *R/pair.matrix.R
ebc8fb3e1b305b4d799b251025b205a1 *R/pairscan.R
6e80489768f11b311fbf624406e12edb *R/pairscan.kin.R
3a404bbce01b8124f3a5cf88828c4391 *R/pairscan.noKin.R
cb82b75fe430ba9303f19303b7f9febb *R/pairscan.null.R
69b5cdf466ba622e6ece3e627adf288b *R/pheno2covar.R
2eb734968d2f933f1c4fe3646b49a31c *R/plotCollapsedVarInf.R
db11278ddfe3d1f24dfbed5765102dc4 *R/plotNetwork.R
025aaca3726990c919d0cee60029a4e0 *R/plotPairscan.R
aff40d6e292a34e0ec5343d006eed3b3 *R/plotPheno.R
0e053403dcd5c9a9e317d8e8d245869e *R/plotPhenoCor.R
a241ffdd722d9548aaa2d75f7054a849 *R/plotSVD.R
53ef47af77b613d5fb9f8f50e36facf7 *R/plotSinglescan.R
850cadfe26b9391f0bfb099c59eddfcb *R/plotSinglescan.heat.R
a39d58357e15e18b13293fee04c2c24f *R/plotVariantInfluences.R
0690b9d23eac122acc0166a8129252c9 *R/qqPheno.R
e7b18b143270876a74c91017e6c417ed *R/read.geno.R
7d2e05b522f93b068891942d88912c19 *R/read.pheno.R
28789f8f45bd9eec139395af5e1a2ed0 *R/read.population.R
208cddaf4b2b7d1e4c8daba2c8bb4c30 *R/remove.ind.R
d3d6a0ce628e166a5192906cc63be09e *R/remove.markers.R
eb8946fc2c2b2225b0d1d27c8cfb4ab7 *R/report.progress.R
b8ab7d5aa5abbcd59a91452e8adeca37 *R/rotate.mat.R
68177759f8d641f8ca3a63567ce96f88 *R/rz.transform.R
1a16b27d9f0be331a5dc6a1e800d603c *R/segment.region.R
6c6b4d77072b35892826076fd8014a3b *R/select.by.chr.R
f469e9deeb6fa06c347e303931a190b1 *R/select.by.ind.R
71fa1dd06a229ed84ab0ebeb55d90511 *R/select.eigentraits.R
790a92098bf0c80ae3cd583c1238f3d0 *R/select.markers.for.pairscan.R
f9d8f81701a1ec87bf0b92ab3e58c278 *R/select.pheno.R
d730f31c6460da5f32a92875e8af905a *R/singlescan.R
b121dfb924e951ab7f08b837c818747c *R/sortByThenBy.R
023437cd40d44f9f6043ce70cdb53692 *R/sortCross.R
a36c67ae83469feeff5316bbe1707a0c *R/writePopulation.R
b0d7b600960ae07daa0bd53d814c645d *R/writeVariantInfluences.R
922d848d2f5371fd004b8a4fbd2d68f9 *build/vignette.rds
446c411bd2fa09bbb6f5629392921d8d *data/obesity.cross.rda
d4e96cd1ebfaa70b12429beb072e5a27 *inst/doc/cape.R
1e500ae067fbe189db8d840f5ea482ba *inst/doc/cape.Rnw
60a43b421a943668c044d4d604f2de1e *inst/doc/cape.pdf
2b7f3683b90237fd190222e1013aca21 *man/bin.vector.Rd
99cf307724b5154827f4c550df695499 *man/calc.delta.errors.Rd
fc91e02f3e58e311cbf6ef0644f60ec7 *man/calc.p.Rd
1e8dde053d682ff81dcd8b7cb099a02f *man/cape-package.Rd
1abe3a74f95bfaaf6d24ab7f229af4ce *man/consec.pairs.Rd
8c6bb38917e1ad7c675f59897915ec49 *man/delete.pheno.Rd
1f4ed4d4c8d82d4135fd8b1393a42f73 *man/direct.influence.Rd
422f92f149eb89eff66fc2ff43c4830e *man/error.prop.Rd
e785e6f16cee32c9747f0708d4d69e70 *man/filter.hwe.Rd
75ae57033c01290cafad43fb4482bf93 *man/filter.maf.Rd
615735721f3277ac9c69865158d99c9c *man/genome.wide.threshold.1D.Rd
dd712e9def41d7c4d7309a050dc68ad5 *man/genome.wide.threshold.1D.parallel.Rd
fbf6e389b6ee0391471aa046493131e8 *man/get.chr.markers.Rd
55c824601312ccccb249afc0767002bf *man/get.col.Rd
73977ca83fd71415348c6ee113775a17 *man/get.col.num.Rd
4e048ee032598e304d9db3ba745229f3 *man/get.covar.Rd
55cf6865bf832c49516693977833ab17 *man/get.eigentraits.Rd
3b62866b01c8fef772a21f7af455f60d *man/get.geno.Rd
4af25f0ba123b2f667fbc7afcc2a725a *man/get.geno.with.covar.Rd
5c0303c22914f33781018d45ff32f842 *man/get.layout.mat.Rd
af66a02550c01e711f2ace5175b9bd94 *man/get.linearly.independent.Rd
b709a99aeca77ebb9123816c71a2b819 *man/get.marker.chr.Rd
c597cb4de1206d73845657b0600da921 *man/get.marker.idx.Rd
7013691e85963fe2c153c1241a3f4211 *man/get.marker.location.Rd
5d63aefafd3acbcea5d91fbf42a22879 *man/get.marker.name.Rd
41bfcf80af3fabe369907f5b5f70d371 *man/get.marker.num.Rd
89c83da0320561240858d50c4fee172e *man/get.marker.val.Rd
64424daf67abc9a13d56acab70f250bc *man/get.network.Rd
0b657c47fa0cc5c52b53ec20bcc1a356 *man/get.pairs.for.pairscan.Rd
dbf03c48de498ac1ece3b0c311bcf7aa *man/get.pheno.Rd
47d37f25e4c0b6177b7bbe0255f0116c *man/histPheno.Rd
43d011a8147e1bade32d2900528c37d3 *man/impute.missing.geno.Rd
cbe12fb80defbddd71b0b40bde63fd14 *man/kinship.Rd
6e701da95e2b18c6f807588962a17727 *man/kinship.on.the.fly.Rd
9e47b65002643b1ebfb9c7ead7ae1d3d *man/linkage.blocks.network.Rd
d3e99574ae1edcf398fa4ca879a1a42d *man/make.data.obj.Rd
85fe18eaded70a55e21c0fbfa3099067 *man/marker2covar.Rd
64830d04a8ed8b8d40786fb2cca2cf71 *man/myImagePlot.Rd
8a40b319e6d0df6fd3f04101671b1282 *man/norm.pheno.Rd
47ca416232c90649732a00c299fec037 *man/obesity.cross.Rd
5cae88ac8060a74e038df3fe64f9078f *man/one.pairscan.parallel.Rd
8e637a459144cb917f2df0e73e43c9bf *man/one.singlescan.Rd
0f244e5e259f7b653652b3983d268e25 *man/pair.matrix.Rd
a1d9a9e24d7843afad6b2362734af4ef *man/pairscan.Rd
2f1a4b8a21f2930c0654397ad98153ac *man/pairscan.kin.Rd
a807fe470da5b99b67e787068da419ef *man/pairscan.noKin.Rd
dfe030003ea99306c57d69ccc39d5a59 *man/pairscan.null.Rd
2b135affa05b6f42031c50bc2b677efd *man/pheno2covar.Rd
60a3998a63f0a4dd4f2914eb729ae2da *man/plotCollapsedVarInf.Rd
4297f0d5245238cf216f9e2711411593 *man/plotNetwork.Rd
fa85f8abf2a33fcd93bdb93ac54ae307 *man/plotPairscan.Rd
af4bbb327c29f06728b406fb9570e846 *man/plotPheno.Rd
3267a3b33300a697415d83758855a202 *man/plotPhenoCor.Rd
c0a8156125bbece40e8b9d1f6ab506bd *man/plotSVD.Rd
070dab7b1ac15298d2f93017aa98da19 *man/plotSinglescan.Rd
f5afb651656fbf4d9b7a02350ad6c9ac *man/plotSinglescan.heat.Rd
420311d809744e0ba7f7369894926823 *man/plotVariantInfluences.Rd
2693049605089fa786a9f21abbf15325 *man/qqPheno.Rd
336522a3973a7b972067d7efe8904f8a *man/read.geno.Rd
7efe9bec141e7a292751ff1c4c271383 *man/read.pheno.Rd
568b317479f2fa953505bb50de1ab52b *man/read.population.Rd
a45c34ffa46cb4e0e14651a8f561c9f6 *man/remove.ind.Rd
2d942d30b8ed4c475249d6e13fcd2da9 *man/remove.markers.Rd
c3eef3378e08fce8fc22ef95594a680f *man/report.progress.Rd
be2dc638b7814857092dadf12c17e72e *man/rotate.mat.Rd
3ebb30c09f4dcb86f76ad015e68379cc *man/rz.transform.Rd
e50ca3d317ebf6c2c58399c0b902b9bb *man/segment.region.Rd
d05ddeeca1f406ac0c34510c67f0694f *man/select.by.chr.Rd
0af0a1dba46d50a86bd1b61847ca8f92 *man/select.by.ind.Rd
497e7d412e1686783b7bbcbdc000a557 *man/select.eigentraits.Rd
adf20862ab95e1b28626bf34c1dfb32b *man/select.markers.for.pairscan.Rd
14a624f6bff5dbf9356a3c29fca11ebb *man/select.pheno.Rd
61d61e6976d769e369fde4f405a148bf *man/singlescan.Rd
74c964852f36eadcd109b3f2623028d6 *man/sortByThenBy.Rd
62e62d90fd9b1f6524c2caa7240895f6 *man/sortCross.Rd
90c05bec7942cdcc7828b3f9753a9447 *man/writePopulation.Rd
cc03d931aa147296bdf132f3df95b52a *man/writeVariantInfluences.Rd
0fe1fa3c4e7c1e6bd20ccd3ac65ce72e *vignettes/cape-017.pdf
2f6e1e7f4ed0740b7de695d8a1f4e0af *vignettes/cape-019.pdf
1e500ae067fbe189db8d840f5ea482ba *vignettes/cape.Rnw
2cec563fe3bebaf02d1f7132ca25c8a7 *vignettes/cape.bib
b9c44cf3de60d0668c13139ee58359a6 *vignettes/interaction_fig.pdf
a228dc9007cbe94d2992130376ef6a0e *vignettes/reparam.pdf
