d5e24c119b8ebce93b0460f847fb58b2 *DESCRIPTION
17a67982d233013c788181c0cb2e56ed *NAMESPACE
617da82f632927bcaa718f1a2e18f342 *R/DEfuns.R
02cf83675060fd6cc435c7af4c1b8c5b *R/DEpanel.R
a9fe941ad29612b47dd00efc30f63361 *R/DEplotFuns.R
7a10ad25d161a1643521f72c140bcf87 *R/DEplotPanel.R
7d7530875aea966f92b61ed4beb215a9 *R/DEsummaryFuns.R
9a647acde4d03c26cdd3af499a45b0f1 *R/DEsummaryPanel.R
2f7f3f6992e2babeef123489a19328f9 *R/GRNCisPanel.R
18bfb9bd1cab03cd5fe65e9a236a2751 *R/GRNCustomPanel.R
010be3f797049d3386cf01a85e7c89f6 *R/GRNTransPanel.R
ef8b7127628382649fba47c3454ed480 *R/GRNfuns.R
c303996c1b7503a898ad9cb09db98eea *R/GRNpanel.R
fe516ba9d24b03bd929289a348e85233 *R/QCpanel.R
a02ddb3b1f2800334e8565c87ff9bd3d *R/QCplotFuns.R
daaf925165213f94da46fd43de845fd6 *R/crossPanel.R
ce66db50228190e1084e450265d3f75a *R/cross_plot.R
bac4678addfceb5c7ec07a584babe937 *R/enrichmentPanel.R
9cd71f04753aa28859561a0319f7de87 *R/generateShinyApp.R
a7b774f4f6af8b2787eeab7707147f8d *R/landingPanel.R
c8c3e46c237e10e7ef54c4dde57eeca3 *R/modalityPanel.R
3d10e526f035060f86fb813d1303449b *R/patternFuns.R
839b16e48725388473b6a398132d382e *R/patternPanel.R
2db7bfc46ddbf38489e4c688b8380204 *R/preprocessExpressionMatrix.R
58a26d9ec688a90beeb4d563570292f2 *R/preprocess_miRTarBase.R
a54ae49aa019acd380059abcf1773f68 *R/sampleSelectPanel.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
a200b55a61c8e43b5703354d6484865b *README.md
e5eb12517305355e7ef9665bd11316bc *build/vignette.rds
b4efb9c47acec73b947e1dfc3e79ed9e *inst/doc/IntegratingMultiomics.R
1486f7663da3baf6286403f55ef0c3de *inst/doc/IntegratingMultiomics.Rmd
4e0f651276064a9bc166e89127abc505 *inst/doc/IntegratingMultiomics.html
afe97b513b1e69deeb7c97e89f66b8c0 *inst/doc/bulkAnalyseR.R
394ad855bc75288baac875a85b3a2cc0 *inst/doc/bulkAnalyseR.Rmd
7287c6bd717dbc7fa7308b9a82f979ff *inst/doc/bulkAnalyseR.html
a0d054e0f22ae993d02bc51af74db220 *inst/extdata/expression_matrix.csv
2e0b269f7e833b771c000ae50bc7e74f *inst/extdata/expression_matrix_preprocessed.csv
a9e8e644a537dd5539ebda0c9bd9428e *inst/extdata/mmu_MTI_sub.xls
5ba875abedbf585fe2ef3c254a4f14c0 *man/DEanalysis.Rd
b4b645cf7cdf8ab01f5438af8c0e4d33 *man/DEpanel.Rd
36aab589a8542231534fae28f54aec2b *man/DEplotPanel.Rd
62acce6faf06cee3286bc03e690a5cd0 *man/DEsummaryPanel.Rd
a3e297b39482054bd21ecf0b6256b947 *man/GRNCisPanel.Rd
aa4493d93b3758dcb84796da6c5eee16 *man/GRNCustomPanel.Rd
6fa6e7a31117235363c7f36b929e564f *man/GRNTransPanel.Rd
d544dd33997e070ba1c781d634af5869 *man/GRNpanel.Rd
cd103d12bd30757b48f2b10ec6299ba4 *man/QCpanel.Rd
234e189780b8a38a61fb9c1f163ffc50 *man/calculate_condition_mean_sd_per_gene.Rd
0e280bb8a551b8f7304a24e2b1c42cbb *man/crossPanel.Rd
5b5c000fd417a9c393b5298445582918 *man/cross_plot.Rd
bf205d3bed1886205a8e42ffc2c848d4 *man/determine_uds.Rd
6a1d8276018daed745476caad653538c *man/enrichmentPanel.Rd
1294a9e36e70794679eece683d27cc43 *man/expression_heatmap.Rd
e236681f22e96dc292b29742251b75e3 *man/find_regulators_with_recurring_edges.Rd
564625a55f5c6e1d7c204713117bc0a7 *man/generateShinyApp.Rd
c1bfe385b8c497ed9d408ce363be4ff6 *man/get_link_list_rename.Rd
f06043047209359d3910204ebc082c6f *man/infer_GRN.Rd
04a73e3aee07027ddcdaf86910e88e5a *man/jaccard_heatmap.Rd
54a255f09fa251a37e201cb4c6c17091 *man/jaccard_index.Rd
e7a4dbc4c0c647e2db764e9a19847719 *man/landingPanel.Rd
e34687a61942d9411fc4327620a59e99 *man/ma_plot.Rd
18129206dda2ec42e6248484f8327483 *man/make_heatmap_matrix.Rd
932608a735d74036df2b652b62876b2d *man/make_pattern_matrix.Rd
b91ce6fc317775b5c5cc2a854b7bb7c4 *man/modalityPanel.Rd
52dbec95e1926b44b543228b9100cf5e *man/noisyr_counts_with_plot.Rd
5433f253c8c8469c1b0a0077c160a65d *man/patternPanel.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
fd4fa62c1af709bf219ce0c1c8dc18a1 *man/plot_GRN.Rd
edb4a7b909b64a7b9b7577d9abea6c75 *man/plot_line_pattern.Rd
f5579c33d93aa0ee9d65ba33d7c7a8c9 *man/plot_pca.Rd
45c10c0802ff98b00198a93e508416cf *man/plot_upset.Rd
8086e01cd4cb0de0cb5f962666238d22 *man/preprocessExpressionMatrix.Rd
9b6b93601d32cd35db6ffda4c59a6584 *man/preprocess_miRTarBase.Rd
2330d929dea693fd2009e360d2f54561 *man/rescale_matrix.Rd
64205e5b27b5ae5f3873a046709303cf *man/sampleSelectPanel.Rd
4cc29005851f31731f18d54e8cf620b2 *man/volcano_plot.Rd
3e58a50ea10f141f1207b48d6b629710 *tests/testthat.R
50254b793b0c8f3f51cec3339d0d4ae6 *tests/testthat/test-GRNfuns.R
1486f7663da3baf6286403f55ef0c3de *vignettes/IntegratingMultiomics.Rmd
394ad855bc75288baac875a85b3a2cc0 *vignettes/bulkAnalyseR.Rmd
cf6fad8d5d6875a9db6f3c59a3d5bec2 *vignettes/figures/CisIntegrationExample.png
99ab4d937cdb3563c9e557f6da89a5f8 *vignettes/figures/CrossPlot.png
904869204ca4ed2423d788fa32ad1dbf *vignettes/figures/CustomIntegrationExample.png
c8150c3f5c45f016a3ebd09dcd79228e *vignettes/figures/DE.png
3f1e5af445ff1d7288c437b0d2f7f5c6 *vignettes/figures/Enrichment.png
a293a0c8d6d2869d837069a0ab1fc0aa *vignettes/figures/EnrichmentIntegrationExample.png
09e968c741e498a3b43161174fd2b367 *vignettes/figures/ExpressionHeatmap.png
68ab18505f87a2d6cd7fb2fe5565d03c *vignettes/figures/ExpressionPatterns.png
13473e2358dd70121e6a74c99040a45d *vignettes/figures/ExpressionPatternsHeatmap.png
e666c6c5f7ad9b0e732a79554c27fd93 *vignettes/figures/ExpressionPatternsLinePlot.png
bdfab824821792ee260af3f531aadbea *vignettes/figures/GRN.png
f2669f65cb2a3b8f1f5f06dd02543b7e *vignettes/figures/JSI.png
5a075cf4d42833d18bd595678382d5f7 *vignettes/figures/MAPlot.png
ac163b508098b4de68725acdca8da65e *vignettes/figures/MA_QC.png
dfb4b1680a2b771c43e7005e43e66b96 *vignettes/figures/NoisyRPlot.png
c179c763625a04486db1f77a0891dbbd *vignettes/figures/PCA.png
5d4beedc22c15e0b428d1aaf6abdcd3a *vignettes/figures/PCA_DE.png
61e49b2ac26349a6837eb9ca1c6a8b63 *vignettes/figures/SampleSelect.png
61e49b2ac26349a6837eb9ca1c6a8b63 *vignettes/figures/ScreenShot.png
c866811c92d9cc983e023345df2a5726 *vignettes/figures/TransIntegrationExample.png
89d53a60b8e53c077186e068f02a7918 *vignettes/figures/VolcanoPlot.png
7c3a71e9fe6cf54ad91223ae2961e951 *vignettes/figures/workflow.png
