a366c809ddc0fe21b030fcf0d13d2168 *DESCRIPTION
dba9443fc5ce1c4d9b07edd4d721f01f *NAMESPACE
8a3add866d0c245824f20891d0cc9b31 *R/DEfuns.R
c1bc68570e2ac08e1a3afa7f5fd7bcd9 *R/DEpanel.R
7abe8aa341872ddb82bd16a9bbfa3efc *R/DEplotFuns.R
e370a3cc2c35e49f8b29c9626de503df *R/DEplotPanel.R
538b465f977756eee7013582b676451b *R/DEsummaryFuns.R
a1336d775441088156a2baa705a4bf63 *R/DEsummaryPanel.R
e26685a552590762c716c6460bfc96e0 *R/GRNpanel.R
971403cad13184bc16659da6cf6ae59d *R/QCpanel.R
a02ddb3b1f2800334e8565c87ff9bd3d *R/QCplotFuns.R
07643f4ccd2b0393bf963651f8f8dfd5 *R/crossPanel.R
f2050461b7f7f38c261140c5e605a618 *R/cross_plot.R
8ea35f92333cf5d6ef7cd495a70db18e *R/enrichmentPanel.R
b1867b8404fb2dc41fa7e8390e10592b *R/generateShinyApp.R
3d10e526f035060f86fb813d1303449b *R/patternFuns.R
3f3cafca10ff4b451f09ef4560565f28 *R/patternPanel.R
5103c56ce08299818fdba71c5ff43357 *R/preprocessExpressionMatrix.R
e8edb99c8e1a875d3bba659ff5633983 *R/sampleSelectPanel.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
7e0090e0ba5da68869e79393803cc357 *README.md
868b369209309b942c80ff0b4f0c5e7e *build/vignette.rds
464f91555091dcb853f60935f4a19946 *inst/doc/bulkAnalyseR.R
e9a5b895c753fe9ed55bb253b6fcfc88 *inst/doc/bulkAnalyseR.Rmd
9cae06d2dba888120be50126b452e9c6 *inst/doc/bulkAnalyseR.html
a0d054e0f22ae993d02bc51af74db220 *inst/extdata/expression_matrix.csv
2e0b269f7e833b771c000ae50bc7e74f *inst/extdata/expression_matrix_preprocessed.csv
ed259b82dbbd5035fea1cf93932c8716 *man/DEanalysis.Rd
93128d77ff3a4d796b1a44a4b73a1ae5 *man/DEpanel.Rd
aaa15188697d87dbe60bca07e851d396 *man/DEplotPanel.Rd
330670092f12be2633b553b51e263ae9 *man/DEsummaryPanel.Rd
41da3f6da74c35d89dcea671808081ff *man/GRNpanel.Rd
70caed76d689a7ee3f64ecc6661371a7 *man/QCpanel.Rd
cf43efa9976bfba81fce2ecd2beaff45 *man/calculate_condition_mean_sd_per_gene.Rd
174a91587d1b28e60851f7d641091e0b *man/crossPanel.Rd
2022d307b1922b26d02cabbec875027e *man/cross_plot.Rd
bf205d3bed1886205a8e42ffc2c848d4 *man/determine_uds.Rd
86138d8753c17b58965ab1934a6d83a4 *man/enrichmentPanel.Rd
c7360ed02d56984cfb41b6f608eee29a *man/expression_heatmap.Rd
fb248186791e6bdedcc2c74bf8c2fe80 *man/generateShinyApp.Rd
237a3a4e6652156283af2488e885d10f *man/jaccard_heatmap.Rd
54a255f09fa251a37e201cb4c6c17091 *man/jaccard_index.Rd
e34687a61942d9411fc4327620a59e99 *man/ma_plot.Rd
18129206dda2ec42e6248484f8327483 *man/make_heatmap_matrix.Rd
932608a735d74036df2b652b62876b2d *man/make_pattern_matrix.Rd
84e2a7295a24576de3ac0e021d416a9e *man/noisyr_counts_with_plot.Rd
4f66b63c9eef347c7f6ba659280ad745 *man/patternPanel.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
edb4a7b909b64a7b9b7577d9abea6c75 *man/plot_line_pattern.Rd
7a9448e7c7d11dd12fe6aa7ced7074ff *man/plot_pca.Rd
7ffe4b4b97c704c4695310def7d64fd6 *man/preprocessExpressionMatrix.Rd
2330d929dea693fd2009e360d2f54561 *man/rescale_matrix.Rd
1a8acc173e7f2b48d4fd235acc7b31fc *man/sampleSelectPanel.Rd
4cc29005851f31731f18d54e8cf620b2 *man/volcano_plot.Rd
e9a5b895c753fe9ed55bb253b6fcfc88 *vignettes/bulkAnalyseR.Rmd
99ab4d937cdb3563c9e557f6da89a5f8 *vignettes/figures/CrossPlot.png
c8150c3f5c45f016a3ebd09dcd79228e *vignettes/figures/DE.png
3f1e5af445ff1d7288c437b0d2f7f5c6 *vignettes/figures/Enrichment.png
09e968c741e498a3b43161174fd2b367 *vignettes/figures/ExpressionHeatmap.png
68ab18505f87a2d6cd7fb2fe5565d03c *vignettes/figures/ExpressionPatterns.png
13473e2358dd70121e6a74c99040a45d *vignettes/figures/ExpressionPatternsHeatmap.png
e666c6c5f7ad9b0e732a79554c27fd93 *vignettes/figures/ExpressionPatternsLinePlot.png
120e1f906ffe7e6dd261286fa42c90ce *vignettes/figures/GRN.png
f2669f65cb2a3b8f1f5f06dd02543b7e *vignettes/figures/JSI.png
5a075cf4d42833d18bd595678382d5f7 *vignettes/figures/MAPlot.png
ac163b508098b4de68725acdca8da65e *vignettes/figures/MA_QC.png
dfb4b1680a2b771c43e7005e43e66b96 *vignettes/figures/NoisyRPlot.png
c179c763625a04486db1f77a0891dbbd *vignettes/figures/PCA.png
5d4beedc22c15e0b428d1aaf6abdcd3a *vignettes/figures/PCA_DE.png
61e49b2ac26349a6837eb9ca1c6a8b63 *vignettes/figures/ScreenShot.png
89d53a60b8e53c077186e068f02a7918 *vignettes/figures/VolcanoPlot.png
7c3a71e9fe6cf54ad91223ae2961e951 *vignettes/figures/workflow.png
