05262bbb5995f3c448e981eeed584399 *DESCRIPTION
98f28438f1d29f7c732f9b75c405a039 *NAMESPACE
b6c81450a0efc39356477c5713933eb5 *NEWS.md
f8524876c1ba0683a094167f46d4aa9e *R/as_DNAbin.R
7c63ea44829d581eec02a1d7bd198a74 *R/as_seqinr.R
7f848df1476d1a30797901401b01d35c *R/as_tibble.R
00f37c0f0323f8a7a02e1f104d81d74e *R/bioseq-package.R
4c7deb6c58f26df299080be1a58d8c91 *R/checks_validation.R
358a7088370f75a3f48ca2310a20b0dc *R/data.R
bf880fbc55eeba060bc8d5bdf7fb5ee5 *R/def_aa.R
11044068c4eff8fce56c34a7e93e9d4e *R/def_dna.R
e8239261a6473e50e6d0ec320119c933 *R/def_rna.R
932ca000f7668fe866051a96c5c258e9 *R/dictionaries.R
79a891616025347ac2bd23277f422042 *R/experimental.R
0d2dd82d34cdb18ee89bb3fc5d5e4ff4 *R/genetic_codes.R
71a9254d9b2430caee93b05a416d561d *R/gui_wrappers.R
91d5ce356a0a9b9f56bac170341257c4 *R/internals.R
112af00766122972203338b5eee3788e *R/print_format.R
2851b1dcc00f69bc6214590cc54366c9 *R/read_write_fasta.R
eb823eaa444a2c492d87f5c138dc0773 *R/seq_biological_operations.R
d0ddb79fa2a563b586308ffe84c49a3c *R/seq_misc_operations.R
10c54d676c26ba97b8d1122afb80a6da *R/seq_stat_operations.R
f0c8c6ca0ad4b6f3d6f83e18ce7e9b6e *R/seq_string_operation.R
6e80f50eb261bd4fb9473c33727e7026 *R/seq_summarize_operations.R
fb38e339598e57b6ce523c28f7a34daf *README.md
cc6e802c89a0304bb0944cc4f46d7c67 *build/vignette.rds
6edf9f482b34192213b328fe2c70708a *data/fragilaria.rda
85bf8af93741980f2e7b9566afb7b102 *inst/doc/intro-bioseq.R
756859ae9dadfdfe216b9eaaccfe8138 *inst/doc/intro-bioseq.Rmd
5f2d18280d46eb8cd678d30ac2417c73 *inst/doc/intro-bioseq.html
6c6abecfa91a22fb29becac3f2558879 *inst/doc/ref_database.R
8cb07343df9c8b215b1d973fc1449a10 *inst/doc/ref_database.Rmd
1a4a4b4946aea69c4f1735316f2f05df *inst/doc/ref_database.html
385d3161c71fabe33196b946271a7da6 *man/aa.Rd
b9d88d8c4ba97f03e31f9422b79164e2 *man/aliview.Rd
2447b38a458a6a3c90ab901a5b02045e *man/alphabets.Rd
3b3b5722630c0845052fcc6c95b211d9 *man/as-tibble-ape.Rd
a3080fd38d7014cb4110808dfd228701 *man/as-tibble-bioseq.Rd
e912206462171ae906dc413b21e55e58 *man/as_AAbin.Rd
d986b0d058df3a7a573c978f3da9832d *man/as_AAbin.tbl_df.Rd
8fe7fdcf71277e9562a2b57ccb60737a *man/as_DNAbin.Rd
4de3020ff779bfbb4cd2762d140715ea *man/as_DNAbin.tbl_df.Rd
c4a8619a10c6fa8477bd9b1b780fea34 *man/as_aa.Rd
bd30f1466c71013c50002e0604fa36e5 *man/as_dna.Rd
e989853e08bcfcf1f1e0bf884a0e749e *man/as_rna.Rd
b2324fae2ad1a1d95185a17bec35bc3a *man/as_seqinr_alignment.Rd
3ea4f4715f4dda04d4fa3428182fae01 *man/bioseq-package.Rd
b57d77954018e0ee852159c9f12de2ee *man/dic_genetic_codes.Rd
1a61dc02ceadea7d85dd0be6a95ebe57 *man/dna.Rd
4272349f4789c132e2995292b3af4c2c *man/figures/bioseq_bio_op.gddraw
2ccaf921b64ba47a4c822666afe72381 *man/figures/bioseq_bio_op.pdf
6e54695885c1bfbeee8fc0c29a1c5b66 *man/figures/bioseq_format_fig.gddraw
840fc630bc3bde2346182972b9fc1acd *man/figures/bioseq_formats_fig.pdf
b26123ef7b85a8b3d62d2fbccdba3a56 *man/figures/old_bioseq_fig.gddraw
d5d6e60521f7a075ed9f847233e61168 *man/fragilaria.Rd
903c4d454fe521e8d93eca509ef77abf *man/genetic-codes.Rd
d5df2a42be0c95b15e1d31bfddc9b55d *man/internal-methods.Rd
6be307a1d4192236b4c0a7c4eff1979c *man/is_aa.Rd
8098e8d22af1b37e54ad1fa292233577 *man/is_dna.Rd
de1c1fbd268aa081b66183d1587691cc *man/is_rna.Rd
11fc6da3d5713b00f5b59d9e3d146bdc *man/new_aa.Rd
34b11a71b0449ddd3b4e59f58e9c3b14 *man/new_dna.Rd
e5a2cfbb5fdcc3e3ebb97b63ce4d0ffb *man/new_rna.Rd
a0007bfd9550f75a843cdbe02f1d68f5 *man/pillar_shaft.bioseq_aa.Rd
1d41dfe09022325befb6338bc8da115d *man/pillar_shaft.bioseq_dna.Rd
fce366c8026cb520a2f79a5ff2761be9 *man/pillar_shaft.bioseq_rna.Rd
7f91ba826f4c95691e0bd825bdcd6dd3 *man/read_fasta.Rd
cce72cf9e9d5d0afa35aa7b794e6ac07 *man/rev_complement.Rd
f35f0ec85b526d26eaa17eb228fb3999 *man/rna.Rd
9333a0af04148d20ff00c224ff8abbf0 *man/seaview.Rd
161eb694bd9e02f4a644c0ac6f4b43ba *man/seq-replace.Rd
f5857dff9e13bd238772219a134b9cce *man/seq_cluster.Rd
d05edeac36c2d5c01ccd3a5e0e441a1d *man/seq_combine.Rd
00ecdc20d26057ab8f6f73e48672a0b7 *man/seq_consensus.Rd
93c2292633df23d06e44919088e49c56 *man/seq_count_pattern.Rd
20c1fa90d593418b544c146d2f97cfa5 *man/seq_crop_pattern.Rd
42e3818a8dfc328bd9024b3a4b7a1b0b *man/seq_crop_position.Rd
d7f62d5e9eb1ce107d5eedf48931fdac *man/seq_detect_pattern.Rd
46f56f43152054577e7a30f697ba9a2a *man/seq_disambiguate_IUPAC.Rd
1cdcbdc180c6d46d28a32c95bac81751 *man/seq_extract_pattern.Rd
bfbdab31adaa6f9b0b200ee816916173 *man/seq_extract_position.Rd
73d108afe176496dcdf79a04271f8bf7 *man/seq_nchar.Rd
b852d551182692377a18353270912ba1 *man/seq_nseq.Rd
b0050fadad9108bb91bdb2a208907d38 *man/seq_remove_pattern.Rd
3fa1cc033162807e38dbc108867e5f29 *man/seq_remove_position.Rd
11ee3e4754c1128f735a69b10fb6a02d *man/seq_replace_position.Rd
98ac29b1f325c2bebd31ae7d51c32260 *man/seq_rev_translate.Rd
b8aff7e89073139eb896c79f5611a0af *man/seq_spellout.Rd
e5edcefd936d565f077ef5025ced1550 *man/seq_split_kmer.Rd
fbd3891317720d44c105ffb3065ab5d3 *man/seq_split_pattern.Rd
3e09e14c8ba043403a08af189b511dcc *man/seq_stat_gc.Rd
0db97f9cb2b08c7cca56860e2e4a26f3 *man/seq_stat_prop.Rd
ee7d31b59ea92c3777ee2e73a9dc0b65 *man/seq_translate.Rd
e9b26dd51107efbf462108829b7995a5 *man/transcription.Rd
c2894cfbca7420e38579ebbf620a425a *man/validate_seq.Rd
ee8d8594519f76d442dfdcbe4a630a1b *man/write_fasta.Rd
6a0819c1f9f6c16f0bf7712df958538d *tests/testthat.R
5a0dd5b3c4464227a2046f4412aec191 *tests/testthat/example_fasta_RNA.fasta
30863303a80b78fa84f2faf8e345e559 *tests/testthat/example_fasta_header.fasta
ce363cd1b67748bc1d9ed0d52ffee7a9 *tests/testthat/example_fasta_multi.fasta
3f74b7e731361487680be5bcc53814b5 *tests/testthat/example_fasta_protein.fasta
48da92a1dfd2413094db6aae17e4f1be *tests/testthat/example_fasta_single.fasta
e8511ae60ffc906085a72dbc34d697b5 *tests/testthat/test-class-aa.R
e3bf7f3d9e8246faee03655c9c1e5cc4 *tests/testthat/test-class-dna.R
7b9356ffc662a3691dbccfbaf1a100fe *tests/testthat/test-class-rna.R
d4b791703e024d6d9e1a15a4307c233d *tests/testthat/test-coercion.R
fc8a4382b2055144f104e751dafc4cf9 *tests/testthat/test-gui.R
ec706557eb7f0216b33be2f2b3f3e8a6 *tests/testthat/test-internal-checks.R
2d45069a388ab6dd3d2525dd96c10d96 *tests/testthat/test-op-biological.R
3f017155f9bb9373cf0089d36a3fb540 *tests/testthat/test-op-misc.R
23f843e7328cd1aded2d5fd7ef7d23e0 *tests/testthat/test-op-stat.R
ebe72167e3b6eefb3b7eea87a87d59a8 *tests/testthat/test-op-string.R
7654203389bf9b897b19ef464fda6484 *tests/testthat/test-op-summarize.R
ff79801ed56d1f99f2092806dffddfbc *tests/testthat/test-print-methods.R
317e5502d640353adf09a6da858d74d5 *tests/testthat/test-read-write-fasta.R
de4b0aa7d0eb460799a144cbb2188b62 *vignettes/f_pararumpens.png
756859ae9dadfdfe216b9eaaccfe8138 *vignettes/intro-bioseq.Rmd
8cb07343df9c8b215b1d973fc1449a10 *vignettes/ref_database.Rmd
