# Generated by roxygen2: do not edit by hand

export(are_beast2_input_lines)
export(are_beast2_input_lines_deep)
export(are_beast2_input_lines_fast)
export(are_identical_alignments)
export(beast2_internal_filenames_to_table)
export(beast2_options_to_table)
export(check_beast2)
export(check_beast2_internal_filenames)
export(check_beast2_options)
export(check_beast2_optionses)
export(check_beast2_path)
export(check_can_create_file)
export(check_input_filename)
export(check_n_threads)
export(check_os)
export(check_rng_seed)
export(create_beast2_internal_filenames)
export(create_beast2_options)
export(create_beast2_run_cmd)
export(create_beast2_validate_cmd)
export(create_beast2_validate_cmd_bin)
export(create_beast2_validate_cmd_jar)
export(create_beast2_version_cmd)
export(create_beast2_version_cmd_bin)
export(create_beast2_version_cmd_jar)
export(create_temp_input_filename)
export(create_temp_state_filename)
export(do_minimal_run)
export(get_alignment_ids_from_xml_filename)
export(get_beast2_example_filename)
export(get_beast2_example_filenames)
export(get_beast2_main_class_name)
export(get_beast2_options_filenames)
export(get_beast2_version)
export(get_beastier_path)
export(get_beastier_paths)
export(get_default_beast2_bin_path)
export(get_default_beast2_download_url)
export(get_default_beast2_download_url_linux)
export(get_default_beast2_download_url_win)
export(get_default_beast2_folder)
export(get_default_beast2_jar_path)
export(get_default_beast2_path)
export(get_default_java_path)
export(get_duplicate_param_ids)
export(get_java_version)
export(get_trees_filenames)
export(gives_beast2_warning)
export(has_unique_ids)
export(install_beast2)
export(is_alignment)
export(is_beast2_input_file)
export(is_beast2_installed)
export(is_bin_path)
export(is_jar_path)
export(is_on_appveyor)
export(is_on_ci)
export(is_on_travis)
export(print_beast2_internal_filenames)
export(print_beast2_options)
export(remove_file_if_present)
export(run_beast2)
export(run_beast2_from_options)
export(save_lines)
export(save_nexus_as_fasta)
export(uninstall_beast2)
export(update_beastier)
import(beautier)
