11f40516807a1253b4f648fef955b08a *DESCRIPTION
03e8dba64b5bae01c2387e00d1d37dba *NAMESPACE
5242766a63945a4e509fd639e0b8afc6 *R/RcppExports.R
174c627e5fc152071cd61a2ee6b361d4 *R/bayou-custommodel-input.R
1bb8189d3b656cfb2322ce5f5dc64801 *R/bayou-likelihood.R
c434d9c91b5db69e5e093dfe83ac605e *R/bayou-mcmc-utilities.R
d40a570e2aaafeaf7d67aad6526d37eb *R/bayou-mcmc.R
68b329da9893e34099c7d8ad5cb9c940 *R/bayou-models.R
e5d8e8c385fdf103a2af6ae8401e5d7d *R/bayou-moves.R
6c7a80bdb179f2c0f81141827ed2521d *R/bayou-package.R
4e99b91be5e3b8392d4aae443fe597ec *R/bayou-plotting.R
67ebf328bf9ce5c1f8567e8bdf669c91 *R/bayou-prior.R
b6002d672e27a862037a819cae6d5d0c *R/bayou-simulation.r
27947615bf59dfdc19b626725ed0cf2a *R/bayou-steppingstone.R
dc3b7996177731e6392a6841eb21f54a *R/bayou-utilities.R
0ef3330e505a42ca889e9f6f7a47791f *R/bayou-weight_matrix.R
ec57fdfbb2392a4c3dd4716987c3c14a *R/conversion-utilities.R
9aa5fbd32c69c29661291ff7f9807737 *R/probability.R
28c3317d0b1695e0a95d1f183f44c922 *R/teaching-functions.R
0deaa44470afb880878d2f9fcd755173 *inst/tests/test-data_load.r
11fac2888af8173ae5c263c50f7ab7d5 *inst/tests/test-likelihood.r
0c52c6461cf9628e1108a9227e3fae4b *inst/tests/test-prior.r
c1b83519a473c7150570cb77cf68e4bc *inst/tests/test-weight_matrix.r
58fe195f2d8a9d21d9946bca7f447f43 *man/Lposterior.Rd
baecd96e6a7ba7ac08d29445a210aca1 *man/OU.lik.Rd
28fa895f61aeffa76bd1e5ace0e5ec2e *man/OU.repar.Rd
b36cd02392c1df3a85090a044d9be001 *man/OUphenogram.Rd
9d82a58e3312a172fa1750db455e7ae5 *man/OUwie2bayou.Rd
35bdfac6ab7c4dbe572c228f726b1e71 *man/QG.alpha.Rd
ad6450f96a74459a93c0ca7104b07a8b *man/QG.sig2.Rd
9738409faab05a6245f6f06863c8b090 *man/bayou-package.Rd
64870860b386fff5b1df2639ca5cf174 *man/bayou.checkModel.Rd
cbb4d518faa917e741820c14621a8a3c *man/bayou.lik.Rd
53d23561d71a55dc2eed219607d0ef9b *man/bayou.makeMCMC.Rd
1c85bada91fcb07ffe67fb301b9a4265 *man/bayou.mcmc.Rd
1ada5d773d1255f62c3b6aad8f98d400 *man/bayou2OUwie.Rd
ff37d2fb04fdeba3f859beeaf957a69c *man/cdpois.Rd
c85a2347bd964bbaf58253ae355938fa *man/combine.chains.Rd
54375812e39a9e0602dca429ba4df674 *man/dataSim.Rd
6c05c02992a7a45a4658fb43ee490b35 *man/dhalfcauchy.Rd
01d4a72bb594a2b5183ce7e0d4d25f8c *man/dloc.Rd
14ee60b88c3c933d8aeedb6fcfdb07ee *man/dsb.Rd
4b65dae723a35fdc60140891aedddec8 *man/gelman.R.Rd
458a477a9b3292aa56ed7be4c4ba6dbe *man/identifyBranches.Rd
662f9071d44633ab639d439b592fc095 *man/load.bayou.Rd
77d0ddc1d9c15cd889f9ac87f699daf8 *man/make.powerposteriorFn.Rd
97c3186ac899a3b629c91c627f66e6cf *man/make.prior.Rd
b43dd57c7a82b7d26a1ca0f7c731096d *man/make.refFn.Rd
0689acb8465e507393bf7b807c62acab *man/makeBayouModel.Rd
15bcd0e554be6fc0fce120ff57079029 *man/makeTransparent.Rd
6b39281681cec3cd3760c1f1a713a620 *man/model.OU.Rd
e047ea3446cb4f821b383283aa46398c *man/parmap.W.Rd
b1a3d6ab7b1b89f798c0594d85e5af2d *man/pars2simmap.Rd
7a018cac2c50932e319ffcba34982fb1 *man/phenogram.density.Rd
37fad55388e2a2b8241446fe1bac5701 *man/plot.bayouMCMC.Rd
93f2c16c4c84c384eeca9a43fe6c0122 *man/plot.ssMCMC.Rd
593eddbe5376bcf1584b9ddba3994f50 *man/plotBayoupars.Rd
3f2d3267bf9fe034cea784c818078933 *man/plotBranchHeatMap.Rd
d23e563cfe1b850a7dec48e5c39071dd *man/plotOUtreesim.Rd
08160d133edc05a0aecdb29eb3146b05 *man/plotRegimes.Rd
7d9206c21a7d989ce74d4905a272de6c *man/plotShiftSummaries.Rd
454c2cc6a24fb152a8a57a959bef44af *man/plotSimmap.mcmc.Rd
f3af4b3596253b8442dc7ad4e023427b *man/print.bayouFit.Rd
9b52b21c7ed06f8c422e50683636ea47 *man/print.bayouMCMC.Rd
653d6f3a02ee0467a529153f02619c27 *man/print.priorFn.Rd
6162dd7f017253c0bb2ae0554c46ab95 *man/print.refFn.Rd
a16419d0f206858ca4e7dc7b2e24b02c *man/print.ssMCMC.Rd
ec5f072fe7b250d0936a30ed6a992d46 *man/priorSim.Rd
698e786b4eeac85e03c4139f11bb3317 *man/pull.pars.Rd
970566326752e25e1575aec40bdbae1f *man/regime.plot.Rd
b2686b9f77158db75129d1432badaad3 *man/set.burnin.Rd
232a288928b0009d9923f3d02387d9d7 *man/shiftSummaries.Rd
5036e16a08bbbe03235a01b2befd341b *man/simmap.W.Rd
bb557127dc20c2e4db20c1aba324f286 *man/steppingstone.Rd
dcfedc7322585b539b660aed13eb9161 *man/summary.bayouMCMC.Rd
2f14af531daf35ae5a8e259fd641f47a *src/Makevars.win
318a8b119f75785b22329aded8f6c1c6 *src/RcppExports.cpp
df3983f15976bf2fa21ca5aa6a6c77b1 *src/branches.cpp
694f2cab020583cc19ec3ad459785165 *src/threepoint.cpp
094f2abd6f41e8c0c612a2032dac01e8 *src/weightmatrix.cpp
