ecd18f8801c88ed7b1972e9298b01eb0 *DESCRIPTION
bd9290cfd0901c58ed8165117de347bc *NAMESPACE
6b26cf66fcc4992effdb12452ef54b31 *R/RcppExports.R
5edcf9f28842f9edab8b08dfd67bd0b1 *R/Viterbi.R
a449881573bba08466f887758ff5fa64 *R/align.R
846060558287f739b641de31828be310 *R/aphid.R
3f5449ad56f13739122d3464e2a7075f *R/backward.R
ea7f7c1f495738ae4bfe346b2edbce43 *R/data.R
c04f3c401a25dc2b29bc9cade17b740b *R/deriveHMM.R
b6d53697d1e44c1408d2912bae192056 *R/derivePHMM.R
f798b187f4b2b2267278df8715c70d7c *R/forward.R
f07282c2d3481f7a6a1644f0d5665083 *R/generate.R
ee005f1be032f6b80c2ba9729c9cb774 *R/plot.R
fc779a3513ad8bd12da21359bd243729 *R/posterior.R
aa57079b4f0551331fcf27f0228a9111 *R/print.R
0fa7aca56d2553ff339cafdd84f05db0 *R/read.R
aff979659ad2fe60219a6b25440f3185 *R/train.R
bb3afb5fdf7c7aa403c77640db67805b *R/utils.R
540c341c967761a17d9aca2398e814d9 *R/weight.R
f0a70f3b4525832b7dab4f47c6f20690 *R/write.R
93f06add738aeee9138aa53ae5898cea *README.md
3f22426660225243975291b5f91a4a97 *build/vignette.rds
2cec5e355bd0f72eb17885d6f7c531f9 *data/casino.RData
5591c4ffe2abef1e50d907b8100b7731 *data/globins.RData
6d7df45f3d14ed8fbf40808b19071350 *data/substitution.RData
c06cd48db35a417c57fc7e35bd91c7c6 *inst/CITATION
69679cf39b451c9f9cb676b68b687169 *inst/doc/aphid-vignette.R
83f73a079339971e4bbc6f3f1056f735 *inst/doc/aphid-vignette.Rmd
38ae1142f1c68aa60b6118f33f4128ff *inst/doc/aphid-vignette.html
181a1592b1eb204cee38c4bb65d6e9d7 *man/Viterbi.Rd
c8736e6bd7951d9883a7326f7f7655de *man/align.Rd
06814badfdfd1ad62a0175fa96e35ee5 *man/aphid.Rd
c269d3424998e519ffe8d36d48ec2e20 *man/backward.Rd
dee2879923ae5c4a1eaef550250fefca *man/casino.Rd
4b4fc09599d8c9ee8435eea62d5e219d *man/deriveHMM.Rd
ca7634caa0bd9e3c694d17a566f2e5ee *man/derivePHMM.Rd
1a6614aee58bac74c78452704e77af38 *man/forward.Rd
d689a5fdcdf0f89c4651017cd2e4d8fb *man/generate.Rd
eea7b6d86ca7b2c4c1dac830a3809e5c *man/globins.Rd
f9679e0e28d1c109071da90f7f7bbb9a *man/logsum.Rd
aa4d4471d4aca627eb7057ee426b4369 *man/map.Rd
f2d8a970dd6ee595fb9fffde67e714e5 *man/plot.HMM.Rd
54d2213cb529e5717f3e33c40b93fc2c *man/plot.PHMM.Rd
c08542d155fca9a43bd9467f3c1ba59b *man/posterior.Rd
f63481d41e9a23f95009252922ae3aeb *man/print.Rd
17938ed78b5f0c95a54fdf612fd94458 *man/readPHMM.Rd
67609edc31125ae4604c5b70f8887a16 *man/substitution.Rd
3dec32473aac0da053c9d05fb55175c4 *man/train.Rd
c411797a99fc16b6475c30f20540bd3c *man/unalign.Rd
b146d8864014ea0963dc24668f65cb14 *man/weight.Rd
c028ebf7a9027cc3411158256ea88037 *man/writePHMM.Rd
52561ed26ae347a8e6fe51082d35e738 *src/Makevars
635ba49a12275e8b49d673b7c558edb6 *src/RcppExports.cpp
a6fb21b279041aa04725b18f07bafa9f *src/ViterbiC.cpp
bc9f7ac0061ca90a2d5079a9af659811 *src/init.cpp
52e6f9ddd6cc38d74b9070faf6671cf4 *src/map.cpp
9935f899c18c51e6fe6b59b32df4949a *src/utils.cpp
3b6e844aed784b2217f9fc8b120a64dd *tests/testthat.R
c7c58079606ef9b1e02c8d2cea8043a6 *tests/testthat/test_HMM.R
be025bda46bc51ab1c8b012cdb658d60 *tests/testthat/test_PHMM.R
83f73a079339971e4bbc6f3f1056f735 *vignettes/aphid-vignette.Rmd
e1a83c18859052a58c0475ff0facaf80 *vignettes/aphid.bib
